Browse Element(s) Details


Os.56873.1.S1_at

Description gb:AK110517.1
DB_XREF= gi:32995726
TID=Os.56873.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-G10, full insert sequence.
FL= gb:AK110517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2604410/11Glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26000Os.8290.1.S1_at3/113+14878666..14885409expressed protein
LOC_Os03g26010NANA3+14886347..14887722retrotransposon protein, putative, unclassified, expressed
LOC_Os03g26020NANA3+14888191..14891800retrotransposon protein, putative, unclassified
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56873.1.S1_at--33--7571Chr03:14904487..14904511 (25 bp)
GGGCGTACCTGGTGCACCACGTCTT
LOC_Os03g26044
Os.56873.1.S1_at--1104--3891Chr03:14904479..14904503 (25 bp)
CTGGTGCACCACGTCTTCTACGAGG
LOC_Os03g26044
Os.56873.1.S1_at--145--8031Chr03:14904315..14904339 (25 bp)
GGAGTCCAGGGAGACGTGCGGGAGC
LOC_Os03g26044
Os.56873.1.S1_at--396--4651Chr03:14904091..14904115 (25 bp)
GCGTGCTGGTCATGGGCCGGGCCCA
LOC_Os03g26044
Os.56873.1.S1_at--556--5951Chr03:14904047..14904071 (25 bp)
GAGCAACGCGGCACGGATCCGATTC
LOC_Os03g26044
Os.56873.1.S1_at--1120--3751Chr03:14904019..14904043 (25 bp)
CTCTTCCGCGTGTGCTCATAGATGA
LOC_Os03g26044
Os.56873.1.S1_at--66--10671Chr03:14904016..14904040 (25 bp)
TTCCGCGTGTGCTCATAGATGATGT
LOC_Os03g26044
Os.56873.1.S1_at--886--3991Chr03:14904011..14904035 (25 bp)
CGTGTGCTCATAGATGATGTGGATT
LOC_Os03g26044
Os.56873.1.S1_at--326--7511Chr03:14903993..14904017 (25 bp)
GTGGATTAATTAATAACTCCTCTCA
LOC_Os03g26044
Os.56873.1.S1_at--181--3252Chr05:22664790..22665039 (25 bp)
TAATAACTCCTCTCAAATTTAAGAA
NONE
Os.56873.1.S1_at--1099--5551Chr03:14903961..14903985 (25 bp)
GAAAGGGTGATCTGGATTAACTAGG
NONE
Target Sequence 
GGGCGTACCTGGTGCACCACGTCTTCTACGAGGACGGCAGCGCCAGCGCCGACGGTGGCGGCGTGGCCCCGGCGTCCAGG
GCATCGATCGCGGCGCTGAGGGAGGTCGAGGAGGAGGATGACGACGGCGAGGAGGCGTCCGACTGCGCGATCTGCCTCGA
CGACGGGGAGGAGTCCAGGGAGACGTGCGGGAGCGGGAGGAGGAAGGAGATGCCGTGCGGGCACCGGTTCCACGGCGAGT
GCGTGGAGCGGTGGCTGGGGATCCACGGCAGCTGCCCGCTGTGCCGGCACGAGATGCCGCCGGCGACGGCGGCGGAGGCG
GAGGAGGAGGAGGTGGTGGTGGCGATGGTGCATGGGGAGAGGGTGGTGATGAGGGGGAGGCGCGTGGTGCTGAGCGTGCT
GGTCATGGGCCGGGCCCACGATGACGGCGAGGGCCCGGAGCAACGCGGCACGGATCCGATTCCTCCTCTTCCGCGTGTGC
TCATAGATGATGTGGATTAATTAATAACTCCTCTCAAATTTAAGAAAGGGTGATCTGGATTAACTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis