Browse Element(s) Details


Os.56946.1.S1_at

Description gb:AK110615.1
DB_XREF= gi:32995824
TID=Os.56946.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H08, full insert sequence.
FL= gb:AK110615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1491011/11NADP-dependent oxidoreductase P1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14860OsAffx.30980.1.S1_x_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14860OsAffx.30980.1.S1_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14870NANA11+8361187..8361852hypothetical protein
LOC_Os11g14880OsAffx.7112.1.S1_at11/1111+8368298..8368682hypothetical protein
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14930OsAffx.18868.2.A1_s_at11/1111+8395969..8399295hypothetical protein
LOC_Os11g14930OsAffx.18868.5.S1_x_at3/1111+8395969..8399295hypothetical protein
LOC_Os11g14930Os.46444.1.S1_x_at1/1111+8395969..8399295hypothetical protein
LOC_Os11g14940OsAffx.18868.1.S1_at3/1111+8404993..8405664hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56946.1.S1_at--304--1711Chr11:8382655..8382679 (25 bp)
ACCAAGTTTGGCTTTCACGATGCAT
LOC_Os11g14910
Os.56946.1.S1_at--149--4271Chr11:8382590..8382614 (25 bp)
CCGGCGGTGCTTCCCAGATGGAATA
LOC_Os11g14910
Os.56946.1.S1_at--619--6291Chr11:8382479..8382503 (25 bp)
GATGATTTCACAGTACAACCTGCAG
LOC_Os11g14910
Os.56946.1.S1_at--320--7351Chr11:8382442..8382466 (25 bp)
GTGCACAACGTGATACAGATCCTAT
LOC_Os11g14910
Os.56946.1.S1_at--853--2131Chr11:8382428..8382452 (25 bp)
ACAGATCCTATCCAAGACCATCCGG
LOC_Os11g14910
Os.56946.1.S1_at--354--6131Chr11:8382400..8382424 (25 bp)
GAGGGATTTGCCGTATTCAACCACT
LOC_Os11g14910
Os.56946.1.S1_at--669--4891Chr11:8382372..8382396 (25 bp)
GCTTATACCCGATGTTTGAGGATGA
LOC_Os11g14910
Os.56946.1.S1_at--660--8011Chr11:8382275..8382299 (25 bp)
GGAGGCTCTCATTGGTATGTTTTCT
LOC_Os11g14910
Os.56946.1.S1_at--439--3231Chr11:8382236..8382260 (25 bp)
CAAGTTGTTGGTTGCTGTTGCAGAT
LOC_Os11g14910
Os.56946.1.S1_at--362--8151Chr11:8382153..8382177 (25 bp)
GGACAATATTTCCAATTCAGTTCAT
LOC_Os11g14910
Os.56946.1.S1_at--1103--6631Chr11:8382117..8382141 (25 bp)
GTTGTAAACCCACTTTATACTCATA
LOC_Os11g14910
Target Sequence 
ACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCC
AGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTC
GAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGNGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCC
AAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCNGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTA
CCTAAAGGAAGGTAAGGTNACCGTCCTGCAGGATGTTGTCNAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGT
TTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAG
TACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTC
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis