Browse Element(s) Details


Os.56977.1.S1_at

Description gb:AK110664.1
DB_XREF= gi:32995873
TID=Os.56977.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F06, full insert sequence.
FL= gb:AK110664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g115502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11510OsAffx.31705.1.S1_at11/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11510OsAffx.8678.1.S1_at8/1112+6230258..6234418Leucine Rich Repeat family protein
LOC_Os12g11520OsAffx.19620.2.S1_at11/1112+6236444..6236839hypothetical protein
LOC_Os12g11530OsAffx.10646.1.S1_x_at1/1112+6237493..6237729hypothetical protein
LOC_Os12g11550Os.56977.1.S1_at2/1112+6258504..6258713hypothetical protein
LOC_Os12g11560Os.47463.1.S1_x_at6/1112+6261277..6265909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11560Os.14491.2.S1_x_at4/1112+6261277..6265909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11570NANA12+6267187..6270491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11580NANA12+6276737..6280060transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11590Os.10731.1.A1_a_at11/1112+6283496..6286084retrotransposon protein, putative, unclassified
LOC_Os12g11590Os.38764.1.S1_x_at8/1112+6283496..6286084retrotransposon protein, putative, unclassified
LOC_Os12g11590OsAffx.31869.5.S1_x_at6/1112+6283496..6286084retrotransposon protein, putative, unclassified
LOC_Os12g11590OsAffx.31869.3.S1_s_at3/1112+6283496..6286084retrotransposon protein, putative, unclassified
LOC_Os12g11590OsAffx.31869.1.S1_at3/1112+6283496..6286084retrotransposon protein, putative, unclassified
LOC_Os12g11590OsAffx.31869.4.S1_x_at1/1112+6283496..6286084retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56977.1.S1_at--429--1112Chr12:6548878..6548902 (25 bp)
AGTGCTCAGGAACGTCATCACCGGC
NONE
Os.56977.1.S1_at--886--9071Chr12:6258559..6258583 (25 bp)
TGCTACAACAATATCCACCGACTTA
LOC_Os12g11550
Os.56977.1.S1_at--606--3352Chr12:6258494..6258518 (25 bp)
CACGCTCGCCGATGATGTAGTTAGT
NONE
Os.56977.1.S1_at--601--6351Chr12:6258412..6258436 (25 bp)
GATCCATTCCTTTTTCTTGGACGGA
NONE
Os.56977.1.S1_at--123--8751Chr12:6258300..6258324 (25 bp)
TGTACACCTAGAGAAGGCTTCTGCT
NONE
Os.56977.1.S1_at--975--211Chr12:6258229..6258253 (25 bp)
ATTTGGATGCATGCCTTGCGATCTA
NONE
Os.56977.1.S1_at--200--10691Chr12:6258214..6258238 (25 bp)
TTGCGATCTACTCCGAGCTAGAGCC
NONE
Os.56977.1.S1_at--410--1571Chr12:6258199..6258223 (25 bp)
AGCTAGAGCCGCGTATGAACTGTCT
NONE
Os.56977.1.S1_at--136--5471Chr12:6258183..6258207 (25 bp)
GAACTGTCTCTACTAGCTGTGTACG
NONE
Os.56977.1.S1_at--954--1611Chr12:6258169..6258193 (25 bp)
AGCTGTGTACGTTGTCCTACTATAC
NONE
Os.56977.1.S1_at--152--9891Chr12:6258152..6258176 (25 bp)
TACTATACGGCCAGTCCATGAATAT
NONE
Target Sequence 
AGTGCTCAGGAACGTCATCACCGGCGTTGGCCGGCGTCTGGTGCTCCTCGTCCTGACGCTGTTGGTGTTGGCGGCGCTGG
ATGATCAGGCGCCGCCCATGATCATGGCCTCCGCTGCCAGGGTTTTGCTACAACAATATCCACCGACTTATGGGCCTCCG
CGCTGTTATCCGCCGTACTGTGCACCGCGTCACGCTCGCCGATGATGTAGTTAGTTATATCTGTCTTAAAAAAATTAACT
TCCCTGAATGAATCTGGATAAAATATTTGTCTGATCCATTCCTTTTTCTTGGACGGAAGGATTATGCGTAAGAGTTGTGA
TGAGTACTCCTATTTATTTGATTAGTAATGTTTGTGTTAATTTCTTCCATAAACTACAATATATTGTACACCTAGAGAAG
GCTTCTGCTCCTGTTGCTCCTCCTGCCTGGACAGAGCTGTATAATATTGCTTGCCATTTGGATGCATGCCTTGCGATCTA
CTCCGAGCTAGAGCCGCGTATGAACTGTCTCTACTAGCTGTGTACGTTGTCCTACTATACGGCCAGTCCATGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis