Browse Element(s) Details


Os.56995.1.S1_at

Description gb:AK110709.1
DB_XREF= gi:32995918
TID=Os.56995.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-C11, full insert sequence.
FL= gb:AK110709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0308011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56995.1.S1_at--453--9111Chr01:1178397..1178421 (25 bp)
TGCTGCCCATGGACATGCTCTACTC
LOC_Os01g03080
Os.56995.1.S1_at--546--9411Chr01:1178483..1178507 (25 bp)
TCGTCGTGGAAGAGGATCGCCACCG
LOC_Os01g03080
Os.56995.1.S1_at--705--6431Chr01:1178545..1178569 (25 bp)
GATCAGCGAGCCGACGGATCACGAA
LOC_Os01g03080
Os.56995.1.S1_at--538--4231Chr01:1178555..1178579 (25 bp)
CCGACGGATCACGAAGGCGACGACG
LOC_Os01g03080
Os.56995.1.S1_at--715--1871Chr01:1178586..1178610 (25 bp)
ACGATGGCGCCAGGTTCTTTCCGGT
LOC_Os01g03080
Os.56995.1.S1_at--102--6731Chr01:1178599..1178623 (25 bp)
GTTCTTTCCGGTGCTCAGCCTGCAG
LOC_Os01g03080
Os.56995.1.S1_at--754--8851Chr01:1178759..1178783 (25 bp)
TGATCGCCGGAGACGTAAGCGGATT
LOC_Os01g03080
Os.56995.1.S1_at--1154--2651Chr01:1178775..1178799 (25 bp)
AAGCGGATTGCTTTTGCTAGTGTTA
LOC_Os01g03080
Os.56995.1.S1_at--233--6791Chr01:1178796..1178820 (25 bp)
GTTAGGCAGCTAGCTTGAGCTGGCT
LOC_Os01g03080
Os.56995.1.S1_at--1147--8911Chr01:1178811..1178835 (25 bp)
TGAGCTGGCTCTCGAGTGTACATTA
LOC_Os01g03080
Os.56995.1.S1_at--118--6131Chr01:1178824..1178848 (25 bp)
GAGTGTACATTAGCTAGCTCTAGCT
LOC_Os01g03080
Target Sequence 
TGCTGCCCATGGACATGCTCTACTCCGTGCTCACCGACGAGGAGATGGCCGCGCTCTCCAGCTTCCACGCCGCCACCGCG
GCCTCCTCGTCGTGGAAGAGGATCGCCACCGGCGGCGGTCGCCGCCGCGATGGGAGCCACGGTGGCCGGATCAGCGAGCC
GACGGATCACGAAGGCGACGACGGAAGCGACGATGGCGCCAGGTTCTTTCCGGTGCTCAGCCTGCAGCTCCACGCCGCGC
CGGACGCCGCCGCCGCCGCCGCCGCCGGAGTCAAGCCGAGCGCCGGCGGCGGCGGCGTGAGGCGGCACCGGTCGTGGCAT
CCGAGGCTGGAGGCCATCGACGAGGTGCCGTGCACCGGCGGTTGATCGCCGGAGACGTAAGCGGATTGCTTTTGCTAGTG
TTAGGCAGCTAGCTTGAGCTGGCTCTCGAGTGTACATTAGCTAGCTCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis