Browse Element(s) Details


Os.57008.1.S1_at

Description gb:AK110736.1
DB_XREF= gi:32995945
TID=Os.57008.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F03, full insert sequence.
FL= gb:AK110736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g225801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed
LOC_Os10g22610Os.4183.1.S1_a_at1/1110+11411238..11411871hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57008.1.S1_at--128--2911Chr05:22142925..22142949 (25 bp)
AAGGTTCTCGCCCAATCGATTGGAG
NONE
Os.57008.1.S1_at--104--2311Chr05:22142963..22142987 (25 bp)
AAATGGCTGCCACGGTGCTCACCAG
NONE
Os.57008.1.S1_at--348--1871Chr05:22142998..22143022 (25 bp)
ACGTCCTGTGGTGTTGTCCAACGGT
NONE
Os.57008.1.S1_at--152--3191Chr05:22143157..22143181 (25 bp)
CAATTCTTCCTCATACCACAGGCAG
NONE
Os.57008.1.S1_at--132--7731Chr05:22143252..22143276 (25 bp)
GGTGGCGATGCCATAACAAGACCAT
NONE
Os.57008.1.S1_at--156--3871Chr05:22143288..22143312 (25 bp)
CTGAGTTGTGTAGTTGCGCCGAGCA
NONE
Os.57008.1.S1_at--978--10552Chr05:22143397..22143421 (25 bp)
TTCTTGTCACTTACATGTGGTCCAC
NONE
Os.57008.1.S1_at--149--7491Chr05:22143413..22143437 (25 bp)
GTGGTCCACACTTATAGTTTGTATC
NONE
Os.57008.1.S1_at--984--6891Chr05:22143433..22143457 (25 bp)
GTATCTAGACTATTGCGTCAGTACA
NONE
Os.57008.1.S1_at--450--271Chr05:22143477..22143501 (25 bp)
ATATGTTAGCAAGCGATCCCGGACT
NONE
Os.57008.1.S1_at--788--531Chr05:22143492..22143516 (25 bp)
ATCCCGGACTAGTTGGATCGGCTGG
NONE
Target Sequence 
AAGGTTCTCGCCCAATCGATTGGAGACGAGGGAGCAGCAAATGGCTGCCACGGTGCTCACCAGCCTCGCCACCACGTCCT
GTGGTGTTGTCCAACGGTGGACACCGCACAGGCCGTCCCTTCTTCCTCCTACCACAGGGCAATGCTCCTCGCTGACCACA
TCCTCCACCGCTGCTGCAGCAGATCCCTCCCTCTTCTCCGCTGGCGGTGATGTCAGGGTGAGGCTGCCCGCCCAATTCTT
CCTCATACCACAGGCAGCGCTCCCTACGGACCGACGCCTGACTAGCGCGTTTCCACCGCCGCAACGGATCCCTCTCCCTC
CTCCGGCGGTGGCGATGCCATAACAAGACCATCGGGGCCAAACCTGAGTTGTGTAGTTGCGCCGAGCATGAAGGAGAAAC
TAGATTGACTAGGGAAAAGGAGAGAGGGGGAAGAGCGTTGATAAGTGGGTTCTGTGGTTTTTTAATTTTTTTTTCTTGTC
ACTTACATGTGGTCCACACTTATAGTTTGTATCTAGACTATTGCGTCAGTACAGATGGACCAAGTCAATGTGATATGTTA
GCAAGCGATCCCGGACTAGTTGGATCGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis