Browse Element(s) Details


Os.57052.1.S1_at

Description gb:AK110816.1
DB_XREF= gi:32996025
TID=Os.57052.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G04, full insert sequence.
FL= gb:AK110816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0476011/11expressed protein
LOC_Os05g118209/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04710Os.6284.1.S1_at11/113+2228018..2229741expressed protein
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein
LOC_Os03g04740OsAffx.12733.1.S1_at11/113+2239908..2243106expressed protein
LOC_Os03g04750Os.46086.1.S1_s_at11/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04750Os.12819.1.S1_at1/113+2244044..224583660S ribosomal protein L21, putative, expressed
LOC_Os03g04760Os.57052.1.S1_at11/113+2247424..2250768expressed protein
LOC_Os03g04770Os.10339.1.S1_at11/113+2252077..2255272Beta-amylase, putative, expressed
LOC_Os03g04780OsAffx.3132.1.S1_at11/113+2255971..2256409RNA recognition motif family protein, expressed
LOC_Os03g04790NANA3+2257872..2260775retrotransposon protein, putative, unclassified
LOC_Os03g04800NANA3+2261252..2264203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04810NANA3+2264417..2267227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04820OsAffx.21870.3.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04820OsAffx.21870.2.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04830Os.54272.1.S1_at11/113+2274461..2278949expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57052.1.S1_at--1059--2373Chr05:6712051..6712075 (25 bp)
AAACGAGCCGCCACAAAGCAGAGGA
LOC_Os05g11820
Os.57052.1.S1_at--142--6493Chr05:6712085..6712109 (25 bp)
GATAGCTAGTATCCTTAGGCTTGCT
LOC_Os05g11820
Os.57052.1.S1_at--1074--10093Chr05:6712100..6712124 (25 bp)
TAGGCTTGCTAACTCTCTTGCATCT
LOC_Os05g11820
Os.57052.1.S1_at--802--10733Chr05:6712117..6712141 (25 bp)
TTGCATCTGCACAGTCTGTTGCATC
LOC_Os05g11820
Os.57052.1.S1_at--339--8193Chr05:6712183..6712207 (25 bp)
GGAAGCGCATAGAAGACCTCACCAT
LOC_Os05g11820
Os.57052.1.S1_at--1114--53Chr05:6712224..6712248 (25 bp)
ATTGAACTTGCAATCTTTCTCACCA
LOC_Os05g11820
Os.57052.1.S1_at--111--5273Chr05:6712260..6712284 (25 bp)
GAATGCTTTCGTTCTTATCTGCGAG
LOC_Os05g11820
Os.57052.1.S1_at--417--3693Chr05:6712325..6712349 (25 bp)
CTTTGGGCGCAAATGTGCTACCGAT
LOC_Os05g11820
Os.57052.1.S1_at--310--9973Chr05:6712343..6712367 (25 bp)
TACCGATGGTGGCTATGTCACTCTG
LOC_Os05g11820
Os.57052.1.S1_at--1118--7093Chr05:6712359..6712383 (25 bp)
GTCACTCTGTGAATCATTTGCCAGG
NONE
Os.57052.1.S1_at--830--9893Chr05:6712440..6712464 (25 bp)
TACTTATGATATATGCTGCCACTAC
NONE
Target Sequence 
AAACGAGCCGCCACAAAGCAGAGGAGGATGAGCTGATAGCTAGTATCCTTAGGCTTGCTAACTCTCTTGCATCTGCACAG
TCTGTTGCATCTGTTGAAGTGCCCTCTGTAGGAGATCCAAATGCAAGTATTTGGAAGCGCATAGAAGACCTCACCATCCC
AGCAAGTGACAAAATTGAACTTGCAATCTTTCTCACCAAGCCAGAACAAGAATGCTTTCGTTCTTATCTGCGAGTTGCAA
GTGATGAAAGTTTCCAAGCTTGGGTTATAGATTACTTTGGGCGCAAATGTGCTACCGATGGTGGCTATGTCACTCTGTGA
ATCATTTGCCAGGTGGTGACATTTTGGTTAGGGAGCAATGCATTTTGATAAACCCATGTTACTGTTATATACTTATGATA
TATGCTGCCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis