Browse Element(s) Details


Os.57086.1.S1_at

Description gb:AK110886.1
DB_XREF= gi:32996095
TID=Os.57086.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-H02, full insert sequence.
FL= gb:AK110886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3818011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38140Os.54729.1.S1_s_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57086.1.S1_at--345--3951Chr11:22138544..22138568 (25 bp)
CGGACGCCTCCAACGGCAGGTGGCA
LOC_Os11g38180
Os.57086.1.S1_at--1117--3511Chr11:22138333..22138357 (25 bp)
CATGCTAAGGCCGAACTGCGCGTAC
LOC_Os11g38180
Os.57086.1.S1_at--65--5471Chr11:22138321..22138345 (25 bp)
GAACTGCGCGTACCTGACCGACGAC
LOC_Os11g38180
Os.57086.1.S1_at--384--10851Chr11:22138214..22138238 (25 bp)
TTGGTGACGTGTGGCCGCTTCATCA
LOC_Os11g38180
Os.57086.1.S1_at--269--4911Chr11:22138198..22138222 (25 bp)
GCTTCATCACCCGTGGCTGTATTCT
LOC_Os11g38180
Os.57086.1.S1_at--37--8771Chr11:22138181..22138205 (25 bp)
TGTATTCTCCTTCTCCGATTTGGAT
LOC_Os11g38180
Os.57086.1.S1_at--1113--4031Chr11:22138166..22138190 (25 bp)
CGATTTGGATTACGCCTTCTCTTTA
LOC_Os11g38180
Os.57086.1.S1_at--38--1831Chr11:22138155..22138179 (25 bp)
ACGCCTTCTCTTTATTAGGACTGAT
LOC_Os11g38180
Os.57086.1.S1_at--652--3151Chr11:22138130..22138154 (25 bp)
AATTCTATATTGTTCTCGCTTGTTA
LOC_Os11g38180
Os.57086.1.S1_at--705--10591Chr11:22138118..22138142 (25 bp)
TTCTCGCTTGTTAATGGCATTGTCC
LOC_Os11g38180
Os.57086.1.S1_at--991--31Chr11:22138100..22138124 (25 bp)
ATTGTCCAATGCTTAACTGATACTA
LOC_Os11g38180
Target Sequence 
CGGACGCCTCCAACGGCAGGTGGCACGTGGAGCACGCCGTCGCCACGACGGGCGTCGAGGTCGAGGAGATCCGCACGCCG
CCGCCGCCGCCGCTCGCCACGGCGGCGTCGACGGCGACGGCGATCAGCGTGGCGGGGCTCGGCGGCTGCGGCGACGTGGC
GCTCTTCCTCGGGAAGAGCTCCGCGGCGTGCATCCCGACCGAGGGCTTCCCCATGCTAAGGCCGAACTGCGCGTACCTGA
CCGACGACGCCGGCGGCGACGTGGTCCGGTCGCCGGCGGCGAGGCGGGACTTCGGCGTCTGGGACTTCGGGAGCGGGAGG
CTGCAGAGGCTTGGTGACGTGTGGCCGCTTCATCACCCGTGGCTGTATTCTCCTTCTCCGATTTGGATTACGCCTTCTCT
TTATTAGGACTGATAATTCTATATTGTTCTCGCTTGTTAATGGCATTGTCCAATGCTTAACTGATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis