Browse Element(s) Details


Os.57118.1.S1_at

Description gb:AK110948.1
DB_XREF= gi:32996157
TID=Os.57118.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-H08, full insert sequence.
FL= gb:AK110948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0684011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0031225cellular_componentanchored to membrane
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57118.1.S1_at--883--5051Chr11:3354793..3354817 (25 bp)
GCAGCATCATCAAAGACGGATTCAG
LOC_Os11g06840
Os.57118.1.S1_at--1086--7231Chr11:3355346..3355370 (25 bp)
GTCGCCGGCAGAGTGAAGAAGCTCC
LOC_Os11g06840
Os.57118.1.S1_at--326--4371Chr11:3355369..3355393 (25 bp)
CCACAGCAGCAATTCTTCAGAGGAT
LOC_Os11g06840
Os.57118.1.S1_at--852--6431Chr11:3355391..3355415 (25 bp)
GATCATGACTGTGACTCTGTCAGCC
LOC_Os11g06840
Os.57118.1.S1_at--391--5471Chr11:3355448..3355472 (25 bp)
GAACTGTTCGTGTTCAGTCCCAGAG
LOC_Os11g06840
Os.57118.1.S1_at--1080--10511Chr11:3355460..3355484 (25 bp)
TTCAGTCCCAGAGCTATACTTCCTT
LOC_Os11g06840
Os.57118.1.S1_at--607--331Chr11:3355475..3355499 (25 bp)
ATACTTCCTTGCTTTGTTGTCATAT
LOC_Os11g06840
Os.57118.1.S1_at--912--6631Chr11:3355490..3355514 (25 bp)
GTTGTCATATACAGTGGCTACTAGA
LOC_Os11g06840
Os.57118.1.S1_at--834--10011Chr11:3355534..3355558 (25 bp)
TAGCTTGATTTTGCCACTGTTCTTA
LOC_Os11g06840
Os.57118.1.S1_at--21--451Chr11:3355559..3355583 (25 bp)
ATCTAGTTTCTTTCTCTGTTGTAGG
LOC_Os11g06840
Os.57118.1.S1_at--290--6831Chr11:3355593..3355617 (25 bp)
GTTTACTTACTTCATGTTCATCAAG
LOC_Os11g06840
Target Sequence 
GCAGCATCATCAAAGACGGATTCAGGGTGGATGGCAATGGGAGGATCACGACGATGGCGACGAGCGGGCGGGCGCACGAC
ACGGCGGAGGTTTCGCCGGACGGCGAGAAGAGGGCGATGCTGGTGTGCAGGGTGGTCGCCGGCAGAGTGAAGAAGCTCCA
CAGCAGCAATTCTTCAGAGGATCATGACTGTGACTCTGTCAGCCCCTGCTCAGAAGGGGTTTACTCAGATTTGGATGAAC
TGTTCGTGTTCAGTCCCAGAGCTATACTTCCTTGCTTTGTTGTCATATACAGTGGCTACTAGATCAAAGAAAACCAGTAG
AATAGCTTGATTTTGCCACTGTTCTTAATCTAGTTTCTTTCTCTGTTGTAGGTTGTAGTATGTTTACTTACTTCATGTTC
ATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis