Browse Element(s) Details


Os.57162.1.S1_at

Description gb:AK111048.1
DB_XREF= gi:32996257
TID=Os.57162.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-C02, full insert sequence.
FL= gb:AK111048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3240011/11expressed protein
LOC_Os03g298501/11zinc transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32350Os.27691.1.S1_x_at2/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32350Os.27691.2.S1_x_at1/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32360Os.27691.1.S1_x_at2/113+18467074..18468484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32370OsAffx.31869.4.S1_x_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.4.S1_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_x_at6/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_s_at4/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.5.S1_x_at2/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32380Os.46610.1.A1_x_at4/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32380OsAffx.29073.1.S1_x_at3/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32390OsAffx.13157.1.S1_at11/113+18482987..18484302hypothetical protein
LOC_Os03g32400Os.57162.1.S1_x_at11/113+18485450..18486362expressed protein
LOC_Os03g32400Os.57162.1.S1_at11/113+18485450..18486362expressed protein
LOC_Os03g32410OsAffx.13158.1.S1_at8/113+18490260..18492227hypothetical protein
LOC_Os03g32420Os.55531.1.S1_at10/113+18493855..18494861expressed protein
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57162.1.S1_at--1000--1872Chr03:18485764..18485788 (25 bp)
ACGATGCGTTCCTGCTTCGTCGTCG
LOC_Os03g32400
Os.57162.1.S1_at--970--5891Chr03:18485805..18485829 (25 bp)
GAGCTGCTGTCGTTGCTCCTCCGCG
LOC_Os03g32400
Os.57162.1.S1_at--1146--4411Chr03:18485846..18485870 (25 bp)
GCCAGGCTTCGGGATACGGCAGCCA
LOC_Os03g32400
Os.57162.1.S1_at--956--911Chr03:18485849..18485873 (25 bp)
AGGCTTCGGGATACGGCAGCCACTC
LOC_Os03g32400
Os.57162.1.S1_at--323--4511Chr03:18485952..18485976 (25 bp)
GCCGAGATGCGGCACCAGACGATCA
LOC_Os03g32400
Os.57162.1.S1_at--328--1291Chr03:18485956..18485980 (25 bp)
AGATGCGGCACCAGACGATCAAGAT
LOC_Os03g32400
Os.57162.1.S1_at--509--9131Chr03:18486039..18486063 (25 bp)
TGCTGGTGCCCCTCTGCTCGTGAGC
LOC_Os03g32400
Os.57162.1.S1_at--471--7291Chr03:18486044..18486068 (25 bp)
GTGCCCCTCTGCTCGTGAGCTGCTG
LOC_Os03g32400
Os.57162.1.S1_at--433--1592Chr03:18486061..18486085 (25 bp)
AGCTGCTGCCGGTGGAAAGGAAGAG
LOC_Os03g32400
Os.57162.1.S1_at--666--10331Chr03:18486209..18486233 (25 bp)
TTTACACTTTACTTATTTTGCTATA
LOC_Os03g32400
Os.57162.1.S1_at--268--2192Chr03:18486311..18486335 (25 bp)
ACAAATGTATGGTTAGTTGGAAGAT
LOC_Os03g32400
Target Sequence 
ACGATGCGTTCCTGCTTCGTCGTCGTCGCCCCTCCACCTGCGAGCTGCTGTCGTTGCTCCTCCGCGCTCGCCCGGTGCCA
CCGCCAGGCTTCGGGATACGGCAGCCACTCCGCCCGTCGCCGGCGGCCTTCCACCCACGAGCTGCCGCCGTCGCCTCTCC
GCGCTCATCCAGTGCCGCCGTCGCCGGCGCCGAGATGCGGCACCAGACGATCAAGATGCCGCTGGCGCCCCTCCGCCCGT
GAGCTGCTGCTGGCGCCCCTCTGCCCGCGAGCTGCTGCTGGTGCCCCTCTGCTCGTGAGCTGCTGCCGGTGGAAAGGAAG
AGAAAGAGGAAAGGAAGAAAGGAAGAGAGGTAGAGAGAGAAGGTAGTGAGGAGGAAAGGAAGAGGAAGAGGAAAAAAAAG
GGGGAGAATGAGAAAAAAATAGAAATATTTATTTTGTTATAATTTTTTACACTTTACTTATTTTGCTATATTACAAATAT
ATTCATTTCAAACATATATTTAGTCATTTAAAATATAACTGTTGTAAAAGAAATTACATAAATGTATACAAATGTATGGT
TAGTTGGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis