Browse Element(s) Details


Os.57202.1.S1_at

Description gb:AK111132.1
DB_XREF= gi:32996341
TID=Os.57202.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D04, full insert sequence.
FL= gb:AK111132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4431010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57202.1.S1_at--1048--2151Chr07:26469915..26469939 (25 bp)
ACACGGAATTTCAGGCGGCGCCGCT
LOC_Os07g44310
Os.57202.1.S1_at--935--5011Chr07:26470384..26470408 (25 bp)
GCAGGTCAGGTACAGATTGATCTCT
LOC_Os07g44310
Os.57202.1.S1_at--427--10831Chr07:26470414..26470438 (25 bp)
TTGTGGAAAACTCCTAGGCCATCAT
LOC_Os07g44310
Os.57202.1.S1_at--862--8431NONE
GGCCATCATGTTTTTCGGTCTCATG
NONE
Os.57202.1.S1_at--1142--3491Chr07:26470451..26470475 (25 bp)
CATGGTGACGGTGTGCTTCAAGCAT
LOC_Os07g44310
Os.57202.1.S1_at--681--7291Chr07:26470490..26470514 (25 bp)
GTGCTTTCCACAATCAAATGGCCGA
LOC_Os07g44310
Os.57202.1.S1_at--15--2311Chr07:26470505..26470529 (25 bp)
AAATGGCCGATGTATGCTTGTTTTT
LOC_Os07g44310
Os.57202.1.S1_at--533--6891Chr07:26470530..26470554 (25 bp)
GTATCACTAGCTTTCCAGGACTTAT
LOC_Os07g44310
Os.57202.1.S1_at--11--8311Chr07:26470574..26470598 (25 bp)
GGCTTTGCAATACTGCACGCGGAAG
LOC_Os07g44310
Os.57202.1.S1_at--522--4691Chr07:26470592..26470616 (25 bp)
GCGGAAGAATTTTTCATGTCTGCAT
LOC_Os07g44310
Os.57202.1.S1_at--123--1491Chr07:26470624..26470648 (25 bp)
AGCAATACTAATCCGTTTCCAGTTG
LOC_Os07g44310
Target Sequence 
ACACGGAATTTCAGGCGGCGCCGCTCGCCGGAGAAGTGGTCGGCCCCCGTCGAGAGGGAGGGTTAGACAGGGAGAAGGAG
AGGATGAGGAGCAGCGAGGCCATGGAGCTCCTGGGCCTCCCAGCGCACACCCGCCCGTCGCCTTCCGAGGTTAAGGCTGC
GTATAGGAGAATGGTGATGGAATCGCATCCTGATCGTGTCCCGACGCATCAGAAGTCTCAAGCCGAGTCAAAATTCAAGC
AGGTCAGGTACAGATTGATCTCTGATCATTGTGGAAAACTCCTAGGCCATCATGTTTTTCGGTCTCATGGTGACGGTGTG
CTTCAAGCATGAACTTTATGATATGTGCTTTCCACAATCAAATGGCCGATGTATGCTTGTTTTTGTATCACTAGCTTTCC
AGGACTTATCATAAACATGTATGTATATGGCTTTGCAATACTGCACGCGGAAGAATTTTTCATGTCTGCATGATAATTAG
CAATACTAATCCGTTTCCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis