Browse Element(s) Details


Os.57203.1.S1_at

Description gb:AK111134.1
DB_XREF= gi:32996343
TID=Os.57203.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D06, full insert sequence.
FL= gb:AK111134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6562011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57203.1.S1_at--1--5131Chr01:38426357..38426381 (25 bp)
GCACAGCAACACATCACTTGGTGAG
LOC_Os01g65620
Os.57203.1.S1_at--235--9011Chr01:38426303..38426327 (25 bp)
TGAATGGATACTGCAACCTCACCTC
LOC_Os01g65620
Os.57203.1.S1_at--897--1831Chr01:38426208..38426232 (25 bp)
ACGCTGGTGAGGAACTTCTCGTCAG
LOC_Os01g65620
Os.57203.1.S1_at--761--9311Chr01:38426181..38426205 (25 bp)
TCCCAGAGGTTCAGGCCCGTGGAGA
LOC_Os01g65620
Os.57203.1.S1_at--891--4631Chr01:38426100..38426124 (25 bp)
GCGTTCTCCATGAGGAGGCAGCCGT
LOC_Os01g65620
Os.57203.1.S1_at--520--1671Chr01:38426081..38426105 (25 bp)
AGCCGTCCAGCTTCGCGGATGGGTA
LOC_Os01g65620
Os.57203.1.S1_at--873--2871Chr01:38425916..38425940 (25 bp)
AAGGGCGGATCTTCAAGGCGTGCAA
LOC_Os01g65620
Os.57203.1.S1_at--399--2711Chr01:38425890..38425914 (25 bp)
AAGCTTCTTGGGTTCTGATTGACAC
LOC_Os01g65620
Os.57203.1.S1_at--965--10771Chr01:38425846..38425870 (25 bp)
TTGTAGTTCTTGCTTCCCCTTTTTG
LOC_Os01g65620
Os.57203.1.S1_at--846--7811Chr01:38425822..38425846 (25 bp)
GGTCTTTCTGTTTTGTCATGTTCAT
LOC_Os01g65620
Os.57203.1.S1_at--662--8731Chr01:38425809..38425833 (25 bp)
TGTCATGTTCATCGTTTGGAGTAAA
LOC_Os01g65620
Target Sequence 
GCACAGCAACACATCACTTGGTGAGTTGGTGTACACAGGAGGGTGGAGAGATGGTGAATGGATACTGCAACCTCACCTCG
TCGCCTCCGGTGGCCAGCGGCGCCGTGGAGGCCGAGACCAAATGGGAAGGCGTGGCCGTCGGGGCGGCGACGCTGGTGAG
GAACTTCTCGTCAGCCTCCCAGAGGTTCAGGCCCGTGGAGAGGAGCAGGTCGACGGCCGGTGGCAACGGCGGTGGCCTGC
AGGCCGTGGTGCGGAGGGCGTTCTCCATGAGGAGGCAGCCGTCCAGCTTCGCGGATGGGTACTGGAGGATCCACGACGAC
ATGGACGGCGACGACGCGGCTGGCGAGCATCAGGAGCAGGCGGCGTTCCAGGATGGGGAGCAAAAACGGAGGGAAGAGCA
GGATCATGCGACGGGAAAGAAGGAGAAGATCACGAAGAAGAAAGGGCGGATCTTCAAGGCGTGCAAGAAGCTTCTTGGGT
TCTGATTGACACGTTGAGATCAAAGTTGTACTTGTAGTTCTTGCTTCCCCTTTTTGGTCTTTCTGTTTTGTCATGTTCAT
CGTTTGGAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis