Browse Element(s) Details


Os.57312.1.S1_at

Description gb:AK111280.1
DB_XREF= gi:32996489
TID=Os.57312.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H03, full insert sequence.
FL= gb:AK111280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7252011/11phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed
LOC_Os01g72500OsAffx.25007.2.S1_s_at8/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.2.S1_at7/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.1.S1_at6/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0005886cellular_componentplasma membrane
GO:0004629molecular_functionphospholipase C activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57312.1.S1_at--363--10031Chr01:42393611..42393635 (25 bp)
TAGTTATTTTTCCTTTTAGCCATAG
LOC_Os01g72520
Os.57312.1.S1_at--373--3711Chr01:42393438..42393462 (25 bp)
CTAGCGGTCAAATTGCACCCTTTTT
LOC_Os01g72520
Os.57312.1.S1_at--951--10311Chr01:42393411..42393435 (25 bp)
TTTCAAAGTCACGTGGCGATTTTAC
LOC_Os01g72520
Os.57312.1.S1_at--624--7931Chr01:42393360..42393384 (25 bp)
GGATTCTCTGCTGCAAGCACAAGCT
LOC_Os01g72520
Os.57312.1.S1_at--581--10011Chr01:42393336..42393360 (25 bp)
TAGCTTCTTCTGCTGACGTACAGTA
LOC_Os01g72520
Os.57312.1.S1_at--789--10031Chr01:42393301..42393325 (25 bp)
TAGAGTTCTCTCTGTCTTGTTCCTT
LOC_Os01g72520
Os.57312.1.S1_at--292--10171Chr01:42393254..42393278 (25 bp)
TATCAGAGTCACACAGAGCAGTCAC
LOC_Os01g72520
Os.57312.1.S1_at--672--5931Chr01:42393239..42393263 (25 bp)
GAGCAGTCACTGTATGTACCATTTT
LOC_Os01g72520
Os.57312.1.S1_at--196--751Chr01:42393226..42393250 (25 bp)
ATGTACCATTTTTGGGCGGTGCTTT
LOC_Os01g72520
Os.57312.1.S1_at--211--7331Chr01:42393208..42393232 (25 bp)
GTGCTTTGTGCTTCCCTGTACAAAA
LOC_Os01g72520
Os.57312.1.S1_at--52--2671Chr01:42393154..42393178 (25 bp)
AAGCCGACCTACCAATACCATAGTA
LOC_Os01g72520
Target Sequence 
TAGTTATTTTTCCTTTTAGCCATAGTACTGATAGTTCTGCTAGCATAATTAACCTTGTAGAATCTGAACTGCGGTTGTAC
GTACAATATACTGTGGGTAGTATCTGAATTTTGAAATATATATACTGCGGGTAGTATCTGAAGTACTCACTAAGTTCAGG
TATCAGTTGTCAACTAGCGGTCAAATTGCACCCTTTTTTTTTTTCAAAGTCACGTGGCGATTTTACGCCTGCGCCTCTAC
ACGCAATTAAGGGGATTCTCTGCTGCAAGCACAAGCTAGCTTCTTCTGCTGACGTACAGTAGAAACATTGCTAGAGTTCT
CTCTGTCTTGTTCCTTTCCATTCAAAAGTACACTAGGATATCAGAGTCACACAGAGCAGTCACTGTATGTACCATTTTTG
GGCGGTGCTTTGTGCTTCCCTGTACAAAATCTGAAAGAGAAAGATTGTACTAGGCAGAAAGCCGACCTACCAATACCATA
GTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis