Browse Element(s) Details


Os.57330.1.S1_at

Description gb:AK111316.1
DB_XREF= gi:32996525
TID=Os.57330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C09, full insert sequence.
FL= gb:AK111316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0188011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57330.1.S1_at--985--5671Chr01:479236..479260 (25 bp)
GACTTGTAACATTTGCCTGGCAGCC
LOC_Os01g01880
Os.57330.1.S1_at--1118--3931Chr01:479260..479284 (25 bp)
CGGCGGCTTGATCTTTACTGAGGAC
LOC_Os01g01880
Os.57330.1.S1_at--1151--931Chr01:479290..479314 (25 bp)
AGGAATTACGTTAGCTCGAGAGATA
LOC_Os01g01880
Os.57330.1.S1_at--805--10011Chr01:479313..479337 (25 bp)
TAGAGAGACTACTCCTGCAGGGAAG
LOC_Os01g01880
Os.57330.1.S1_at--767--6011Chr01:479380..479404 (25 bp)
GAGAGAGCAACAGCGCATGTATTGT
LOC_Os01g01880
Os.57330.1.S1_at--814--731Chr01:479396..479420 (25 bp)
ATGTATTGTATGCAGCCGGAGCGCC
LOC_Os01g01880
Os.57330.1.S1_at--563--5991Chr01:479483..479507 (25 bp)
GAGACGATTGATTGGGTTCCCGATG
LOC_Os01g01880
Os.57330.1.S1_at--1157--4051Chr01:479503..479527 (25 bp)
CGATGGGCCGTTTCTGACATTCAGC
LOC_Os01g01880
Os.57330.1.S1_at--638--8951Chr01:479517..479541 (25 bp)
TGACATTCAGCCCACGGCCCAAAAA
LOC_Os01g01880
Os.57330.1.S1_at--95--1431Chr01:479603..479627 (25 bp)
AGAAAGCCCACCGTTATTTGTCTGT
LOC_Os01g01880
Os.57330.1.S1_at--421--1791Chr01:479612..479636 (25 bp)
ACCGTTATTTGTCTGTCCATCGAGA
LOC_Os01g01880
Target Sequence 
GACTTGTAACATTTGCCTGGCAGCCGGCGGCTTGATCTTTACTGAGGACGGAGGAGGAATTACGTTAGCTCGAGAGATAG
AGAGACTACTCCTGCAGGGAAGTGAGGCGAGGAGGAAGAACGAAGCAATTAAGCAGGAAGGAAGGAGAGAGCAACAGCGC
ATGTATTGTATGCAGCCGGAGCGCCGAGGATGCGGCGGCGCCGGCATTGGGGCAGGAGAAAGAAGAGGTCGTCCAACGGC
GGAGACGGAGACGATTGATTGGGTTCCCGATGGGCCGTTTCTGACATTCAGCCCACGGCCCAAAAACCACCCTCCATCGT
GCCGCTCTTCTTCCTGGGCCGAACGCTCTCCCATCTCTTCTCTTAAAAGAAAGCCCACCGTTATTTGTCTGTCCATCGAG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis