Browse Element(s) Details


Os.57347.1.S1_at

Description gb:AK111350.1
DB_XREF= gi:32996559
TID=Os.57347.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G06, full insert sequence.
FL= gb:AK111350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5031011/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed
LOC_Os05g50290OsAffx.27392.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50290Os.2301.1.S1_at11/115+28743399..28744718HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g50300Os.54669.1.S1_at11/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50300OsAffx.4322.1.S1_x_at2/115+28746676..28748855AMP-binding enzyme family protein, expressed
LOC_Os05g50310Os.57347.1.S1_at11/115+28752502..28753597ZF-HD protein dimerisation region containing protein, expressed
LOC_Os05g50320OsAffx.27393.1.S1_at11/115+28754132..28754375hypothetical protein
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57347.1.S1_at--774--1871Chr05:28753195..28753219 (25 bp)
ACGAGGCACTCGTCGAACAGTTCTG
LOC_Os05g50310
Os.57347.1.S1_at--274--9991Chr05:28753356..28753380 (25 bp)
TAGCCATGGGAGGAGACAAGCATTT
LOC_Os05g50310
Os.57347.1.S1_at--108--591Chr05:28753386..28753410 (25 bp)
ATGGTTTGGTAAATCCCCACCTCAT
LOC_Os05g50310
Os.57347.1.S1_at--24--551Chr05:28753398..28753422 (25 bp)
ATCCCCACCTCATTATTTTTATACG
LOC_Os05g50310
Os.57347.1.S1_at--296--10371Chr05:28753414..28753438 (25 bp)
TTTTATACGCCCAAGACATGAGGAG
LOC_Os05g50310
Os.57347.1.S1_at--728--2591Chr05:28753450..28753474 (25 bp)
AACGCAACGGAAGTGAGGACTACTC
LOC_Os05g50310
Os.57347.1.S1_at--963--951Chr05:28753465..28753489 (25 bp)
AGGACTACTCTCTCTGCGATCTTTA
LOC_Os05g50310
Os.57347.1.S1_at--990--9471Chr05:28753509..28753533 (25 bp)
TCTCTCTTCATTTGGCCTTAACCTT
LOC_Os05g50310
Os.57347.1.S1_at--166--8451Chr05:28753521..28753545 (25 bp)
TGGCCTTAACCTTCATTCTTTGTAG
LOC_Os05g50310
Os.57347.1.S1_at--148--10551Chr05:28753536..28753560 (25 bp)
TTCTTTGTAGTCACTTATCCTCCTC
LOC_Os05g50310
Os.57347.1.S1_at--622--10431Chr05:28753550..28753574 (25 bp)
TTATCCTCCTCCATAATTTGGTTCT
LOC_Os05g50310
Target Sequence 
ACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAG
AGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCA
GTAGCCATGGGAGGAGACAAGCATTTGGTTAATGGTTTGGTAAATCCCCACCTCATTATTTTTATACGCCCAAGACATGA
GGAGACGGGTTAAACAACGCAACGGAAGTGAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTC
TTCATTTGGCCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis