Browse Element(s) Details


Os.57354.1.S1_at

Description gb:AK111359.1
DB_XREF= gi:32996568
TID=Os.57354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H04, full insert sequence.
FL= gb:AK111359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57354.1.S1_at--317--4491Chr04:33457286..33457310 (25 bp)
GCCGGGAGAGTCAGATCACCACATC
LOC_Os04g56490
Os.57354.1.S1_at--815--7111Chr04:33457295..33457319 (25 bp)
GTCAGATCACCACATCAGTGCGTGT
LOC_Os04g56490
Os.57354.1.S1_at--1035--3551Chr04:33457307..33457331 (25 bp)
CATCAGTGCGTGTGTGCACAGTGTT
LOC_Os04g56490
Os.57354.1.S1_at--1137--5111Chr04:33457322..33457346 (25 bp)
GCACAGTGTTAAGCATGGCGAGGTT
LOC_Os04g56490
Os.57354.1.S1_at--283--7791Chr04:33457655..33457679 (25 bp)
GGTCCGATCTCCTAACGCGAGCTAG
LOC_Os04g56490
Os.57354.1.S1_at--894--4651Chr04:33457687..33457711 (25 bp)
GCGTCCTCATCTCATCATGTGTAAT
LOC_Os04g56490
Os.57354.1.S1_at--595--3991Chr04:33457745..33457769 (25 bp)
CGTGTATGATTTCGAGCTTTAGCTT
LOC_Os04g56490
Os.57354.1.S1_at--1098--5912Chr04:33457758..33457782 (25 bp)
GAGCTTTAGCTTTCAGGCTTTCAGC
LOC_Os04g56490
Os.57354.1.S1_at--200--4891Chr04:33457774..33457798 (25 bp)
GCTTTCAGCTGGACGTCTAATTAAT
LOC_Os04g56490
Os.57354.1.S1_at--417--9751Chr04:33457808..33457832 (25 bp)
TAATTAACTAGCTTTCGATCTATGC
LOC_Os04g56490
Os.57354.1.S1_at--982--4031Chr04:33457823..33457847 (25 bp)
CGATCTATGCGACGTCAGGACATTT
LOC_Os04g56490
Target Sequence 
GCCGGGAGAGTCAGATCACCACATCAGTGCGTGTGTGCACAGTGTTAAGCATGGCGAGGTTGGCGTCGTTGGTGGGGTGG
AACGGCGGCGGCGGGTGGAGGGAGCGGAAGGCGCGGCAGAGGCTGCGGCGGCGGCAGTACTGCGGCGGGACGGTGTGGCT
GGGGCGGCGGCGCAGGCCGGCGGGCCGGTGCAGGCTGGCCGTGTCGCGGCTGGTGCGGTGGCGGCTGGTGGCGGAGCTGC
TGCGGCCGATCAGGAAGGCGCTGATGGAGATGGCGGCGGCGGCGGGGCGGCGGCAGCTGGTCGCGCTGCCGCAGCTCAGC
TTCCCCTTCGTCGGCACGCTCGCGCTCCCGGCCGCCGTCGCCTGACTCCGGTCCGATCTCCTAACGCGAGCTAGCGCCGC
CGCGTCCTCATCTCATCATGTGTAATAACTTTTTTTTTTTGCCTTTTCTTTTCTTTTTTTCGTGTATGATTTCGAGCTTT
AGCTTTCAGGCTTTCAGCTGGACGTCTAATTAATTAGCTTAATTAATTAACTAGCTTTCGATCTATGCGACGTCAGGACA
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis