Browse Element(s) Details


Os.57425.1.S1_x_at

Description gb:CB624284
DB_XREF= gi:29619272
DB_XREF=OSIIEa12M02.f
CLONE=OSIIEa12M02
TID=Os.57425.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 21025 protein kinase-like protein mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g375709/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37540Os.2741.4.S1_x_at2/1112+23003155..23004784hypothetical protein
LOC_Os12g37550Os.18608.1.S1_at11/1112+23008967..23011524expressed protein
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0004672molecular_functionprotein kinase activity
GO:0004871molecular_functionsignal transducer activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57425.1.S1_x_at--766--9271Chr12:23029975..23029999 (25 bp)
TCCTGGTCCTCTTTCAACAATAACA
LOC_Os12g37570
Os.57425.1.S1_x_at--1034--3031Chr12:23030085..23030109 (25 bp)
AATCCTGTGGGAAGACCTTGTCATT
LOC_Os12g37570
Os.57425.1.S1_x_at--160--3111NONE
AATTGGTCAAGGCTCGTGTGGAACA
NONE
Os.57425.1.S1_x_at--508--251Chr12:23031073..23031097 (25 bp)
ATATCATGCTTTGTGGTATGGCTCG
LOC_Os12g37570
Os.57425.1.S1_x_at--9--6271Chr12:23031188..23031212 (25 bp)
GATGTGGCTGTTAAAGTTTTCTCTA
LOC_Os12g37570
Os.57425.1.S1_x_at--387--4231NONE
CCTTCCGACAAGAGGTATCCCTTAT
NONE
Os.57425.1.S1_x_at--632--2391Chr12:23031611..23031635 (25 bp)
AAACTACGCCATCCTAATATACTTC
LOC_Os12g37570
Os.57425.1.S1_x_at--778--3111Chr12:23031626..23031650 (25 bp)
AATATACTTCTCTTCATGGGTGCGG
LOC_Os12g37570
Os.57425.1.S1_x_at--353--811Chr12:23031641..23031665 (25 bp)
ATGGGTGCGGTTACATCTCCACAAC
LOC_Os12g37570
Os.57425.1.S1_x_at--214--8771Chr12:23031671..23031695 (25 bp)
TGTATCGTAACAGAGTTCCTCCCAC
LOC_Os12g37570
Os.57425.1.S1_x_at--691--5991Chr12:23032287..23032311 (25 bp)
GAGACGACGTGTTCACATGGCTTTA
LOC_Os12g37570
Target Sequence 
TCCTGGTCCTCTTTCAACAATAACAGCACAAGCAGTGCAAGCAGCACGGGTAGTACTAATAGTAGTGCTCTTTACAAAGT
AGATCATGAAGCAGATTGTTTGGATTATGAAATCCTGTGGGAAGACCTTGTCATTGGAGAACAAATTGGTCAAGGCTCGT
GTGGAACAGTATATCATGCTTTGTGGTATGGCTCGGATGTGGCTGTTAAAGTTTTCTCTAAGCAAGAATATTCAGAAGAA
GTGATACAGACCTTCCGACAAGAGGTATCCCTTATGAAGAAACTACGCCATCCTAATATACTTCTCTTCATGGGTGCGGT
TACATCTCCACAACGCCTCTGTATCGTAACAGAGTTCCTCCCACNNGNNNNNTNGTTTCGCTTACTTCAAAGGAACAATA
CCAAGTTGGATTGGAGACGACGTGTTCACATGGCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57425.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis