Browse Element(s) Details


Os.57435.1.S1_x_at

Description gb:CF305688
DB_XREF= gi:33677449
DB_XREF=HDA1--01-H05.g1
CLONE=HDA1--01-H05
TID=Os.57435.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29065 unknown mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3143011/11expressed protein
LOC_Os11g314702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified
LOC_Os11g31420OsAffx.31243.1.S1_at11/1111+17834991..17843229expressed protein
LOC_Os11g31420OsAffx.22566.1.S1_x_at2/1111+17834991..17843229expressed protein
LOC_Os11g31430Os.57435.1.S1_x_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.9446.1.S1_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.19102.1.S1_at10/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.10185.1.S1_at5/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.21108.1.S1_x_at1/1111+17847752..17861778expressed protein
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein
LOC_Os11g31450Os.53055.1.S1_at11/1111+17870111..17876131expressed protein
LOC_Os11g31450OsAffx.13914.1.S1_at1/1111+17870111..17876131expressed protein
LOC_Os11g31460NANA11+17877455..17878644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31470Os.10185.1.S1_at11/1111+17879333..17887731expressed protein
LOC_Os11g31470Os.57435.1.S1_x_at2/1111+17879333..17887731expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57435.1.S1_x_at--620--331Chr11:17856391..17856415 (25 bp)
ATACATTTGGCTTCTGGTGCATTAG
LOC_Os11g31430
Os.57435.1.S1_x_at--49--3591Chr11:17856410..17856434 (25 bp)
CATTAGATGATTTTGTCCGTCGGAC
LOC_Os11g31430
Os.57435.1.S1_x_at--613--8691Chr11:17856423..17856447 (25 bp)
TGTCCGTCGGACTAGTTCTTCAAAG
LOC_Os11g31430
Os.57435.1.S1_x_at--428--10391Chr11:17856574..17856598 (25 bp)
TTTTGCGTAGTCAGTTTACAGATCT
LOC_Os11g31430
Os.57435.1.S1_x_at--490--491Chr11:17856595..17856619 (25 bp)
ATCTGGATTACGATCTCCTGAAATT
LOC_Os11g31430
Os.57435.1.S1_x_at--208--5891Chr11:17856721..17856744 (24 bp)
GAGCGACGAGCTAAACTTCTCAGTA
LOC_Os11g31430
Os.57435.1.S1_x_at--622--5911Chr11:17857062..17857086 (25 bp)
GAGCTTGAGGCAGAAGGTTTCTTCA
LOC_Os11g31430
Os.57435.1.S1_x_at--848--2172Chr11:17885887..17885911 (25 bp)
ACACTTTTCAGAACTTGTGGACGAA
LOC_Os11g31470
Os.57435.1.S1_x_at--231--5931Chr11:17857260..17857284 (25 bp)
GAGCATGTCTTTGCTGGGATTCACC
LOC_Os11g31430
Os.57435.1.S1_x_at--164--4732Chr11:17885930..17885954 (25 bp)
GCTGGGATTCACCTTCCAAAATATT
LOC_Os11g31470
Os.57435.1.S1_x_at--576--711Chr11:17857437..17857542 (25 bp)
ATGATGCTTTCTCTGTGGTTGTTGA
LOC_Os11g31430
Target Sequence 
ATACATTTGGCTTCTGGTGCATTAGATGATTTTGTCCGTCGGACTAGTTCTTCAAAGGATGATTTCATTAAGATTATTCT
TGATGATGATATTTTGCGTAGTCAGTTTACAGATCTGGATTACGATCTCCTGAAATTGTCATATGAGCGACGAGCTAAAC
TTCTCAGTAAGCAAGATCAATTATGCTTATATTGCAAACACATGAAAAGTGCTGTCATAAATTTACAGCATAGAGATAGA
CTTGAAAGTTTGATATGTGAGCTTGAGGCAGAAGGTTTCTTCAGTGTGGATGATGATTCTATTGAATGGGAAAACGAACA
CTTTTCAGAACTTGTGGACGAATTCAATGAGCATGTCTTTGCTGGGATTCACCTTCCAAAATATTATGTTATTCGTGGAA
TTATGGATTATCGGGAAATGTTAAATATGAAGGATAGCACTTGGGATGATGCTTTCTCTGTGGTTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57435.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis