Browse Element(s) Details


Os.57471.1.S1_x_at

Description gb:D21122.1
DB_XREF= gi:416255
TID=Os.57471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57471 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for actin, partial sequence
DEF=Rice mRNA for actin, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g619708/11Actin-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57471.1.S1_x_at--482--4771Chr03:35066234..35066258 (25 bp)
GCTGCGTGTTGCTCCTGAGGAACAT
LOC_Os03g61970
Os.57471.1.S1_x_at--1015--7411Chr03:35066229..35066253 (25 bp)
GTGTTGCTCCTGAGGAACATCCAAT
LOC_Os03g61970
Os.57471.1.S1_x_at--674--6191Chr03:35066218..35066242 (25 bp)
GAGGAACATCCAATTTTGCTGACAG
LOC_Os03g61970
Os.57471.1.S1_x_at--318--171Chr03:35066206..35066230 (25 bp)
ATTTTGCTGACAGAAGCTCCTCTGA
LOC_Os03g61970
Os.57471.1.S1_x_at--449--1451Chr03:35066195..35066219 (25 bp)
AGAAGCTCCTCTGAACCCAAAGGCT
LOC_Os03g61970
Os.57471.1.S1_x_at--739--3791Chr03:35066190..35066214 (25 bp)
CTCCTCTGAACCCAAAGGCTAACAG
LOC_Os03g61970
Os.57471.1.S1_x_at--235--5991NONE
GAGACATTCAAATGCACCAGCAATG
NONE
Os.57471.1.S1_x_at--637--1711Chr03:35066126..35066150 (25 bp)
ACCAGCAATGTATGTGGCTATTCAA
LOC_Os03g61970
Os.57471.1.S1_x_at--1135--8291Chr03:35066111..35066135 (25 bp)
GGCTATTCAAGCTGTTCTTTCACTA
LOC_Os03g61970
Os.57471.1.S1_x_at--40--3251Chr01:28532859..28532879 (21 bp)
CAAGCTGTTCTTTCACTATATGGCA
NONE
Os.57471.1.S1_x_at--450--1611NONE
AGCTGTTCTTTCACTATATGGCAGT
NONE
Target Sequence 
GCTGCGTGTTGCTCCTGAGGAACATCCAATTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCTAACAGAGNGAAAATGC
CCCNAATNATGTTTGAGACATTCAAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57471.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis