Browse Element(s) Details


Os.57505.1.S1_x_at

Description gb:AB028886.1
DB_XREF= gi:5103730
TID=Os.57505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57505 (NCBI UniGene Cluster)
UG_TITLE=MRNA for knotted1-type homeobox protein OSH10, partial cds
DEF=Oryza sativa mRNA for knotted1-type homeobox protein OSH10, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4701611/11Homeobox protein knotted-1-like 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46970NANA3+26508848..26515006retrotransposon protein, putative, unclassified
LOC_Os03g46980NANA3+26515633..26518927retrotransposon protein, putative, unclassified
LOC_Os03g47000OsAffx.13383.1.S1_at11/113+26522011..26522485Chalcone and stilbene synthases, C-terminal domain containing protein
LOC_Os03g47010OsAffx.25591.1.S1_x_at11/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47010OsAffx.14829.2.S1_x_at1/113+26525670..26528227Endo-1,4-beta-xylanase, putative, expressed
LOC_Os03g47016Os.57505.1.S1_x_at11/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47016OsAffx.25593.1.S1_at4/113+26530769..26531315Homeobox protein knotted-1-like 10, putative, expressed
LOC_Os03g47022OsAffx.25593.1.S1_at3/113+26534657..26535581Homeobox protein KNOX3, putative
LOC_Os03g47030OsAffx.25592.1.S1_at11/113+26540134..26541076hypothetical protein
LOC_Os03g47036OsAffx.25593.2.S1_at8/113+26552459..26554923Homeotic protein knotted-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57505.1.S1_x_at--181--1631Chr03:26531210..26531234 (25 bp)
AGCGGCTACCTGAGCAGCCTATGGA
LOC_Os03g47016
Os.57505.1.S1_x_at--439--1771Chr03:26531203..26531227 (25 bp)
ACCTGAGCAGCCTATGGAGGGAGCT
LOC_Os03g47016
Os.57505.1.S1_x_at--311--5071Chr03:26531197..26531221 (25 bp)
GCAGCCTATGGAGGGAGCTCTCCAA
LOC_Os03g47016
Os.57505.1.S1_x_at--363--10111Chr03:26531191..26531215 (25 bp)
TATGGAGGGAGCTCTCCAAGAAGAA
LOC_Os03g47016
Os.57505.1.S1_x_at--765--5371Chr03:26531166..26531190 (25 bp)
GAAGAAAGGCAAGCTGCCCCGGGAC
LOC_Os03g47016
Os.57505.1.S1_x_at--517--1411Chr03:26531164..26531188 (25 bp)
AGAAAGGCAAGCTGCCCCGGGACGC
LOC_Os03g47016
Os.57505.1.S1_x_at--553--1451Chr03:26531134..26531158 (25 bp)
AGAAGCTCCTCCACTGGTGGCAGCT
LOC_Os03g47016
Os.57505.1.S1_x_at--966--1951Chr03:26531122..26531146 (25 bp)
ACTGGTGGCAGCTTCACTACCGATG
LOC_Os03g47016
Os.57505.1.S1_x_at--510--8251Chr03:26531116..26531140 (25 bp)
GGCAGCTTCACTACCGATGGCCCTA
LOC_Os03g47016
Os.57505.1.S1_x_at--447--8471Chr03:26531020..26531123 (25 bp)
TGGCCCTACCCATCGGAGCTGGAGA
LOC_Os03g47016
Os.57505.1.S1_x_at--81--3731Chr03:26531015..26531118 (25 bp)
CTACCCATCGGAGCTGGAGAAGGCG
LOC_Os03g47016
Target Sequence 
AGCGGCTACCTGAGCAGCCTATGGAGGGAGCTCTCCAAGAAGAAGAAGAAAGGCAAGCTGCCCCGGGACGCTCGCCAGAA
GCTCCTCCACTGGTGGCAGCTTCACTACCGATGGCCCTACCCATCGGAGCTGGAGAAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57505.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis