Browse Element(s) Details


Os.57509.1.A1_at

Description gb:AF126027.1
DB_XREF= gi:4901631
TID=Os.57509.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57509 (NCBI UniGene Cluster)
DEF=Oryza sativa photoperiod sensitive genic male sterility-like protein mRNA, complete cds.
PROD=photoperiod sensitive genic male sterility-likeprotein
FL= gb:AF126027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g262341/11Alpha amylase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26170OsAffx.4944.1.S1_at10/116+15310053..15311897hypothetical protein
LOC_Os06g26180OsAffx.27828.1.S1_at11/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.23345.1.S1_at2/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.28650.1.S1_x_at1/116+15313826..15315157hypothetical protein
LOC_Os06g26190Os.21300.2.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190Os.21300.2.S1_x_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190OsAffx.27854.1.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26210OsAffx.15622.1.S1_at11/116+15328732..15331084hypothetical protein
LOC_Os06g26234OsAffx.15623.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.27031.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.28472.1.A1_x_at10/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.13933.1.S1_x_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.57509.1.A1_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26260OsAffx.278.1.S1_at1/116+15373216..15377050retrotransposon protein, putative, unclassified
LOC_Os06g26270Os.51757.1.S1_at11/116+15378506..15383234expressed protein
LOC_Os06g26280OsAffx.27830.1.S1_at11/116+15387453..15388457hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57509.1.A1_at--1114--473Chr06:15338344..15338368 (25 bp)
ATCCTTTTCTTCTCGTTTTAGTCAT
LOC_Os06g26234
Os.57509.1.A1_at--297--5251Chr05:19953300..19953324 (25 bp)
GAATCAGTAATACCCACTTCTCGTT
NONE
Os.57509.1.A1_at--951--8911Chr05:19953394..19953418 (25 bp)
TGACCACAACGACTGACCGACTTAT
NONE
Os.57509.1.A1_at--612--6231Chr05:19953458..19953482 (25 bp)
GATGGCGATTACTCTGATGCTTTAC
NONE
Os.57509.1.A1_at--452--1751Chr05:19953547..19953571 (25 bp)
ACCTGCTGCCTGATCGAATTTGGAG
NONE
Os.57509.1.A1_at--830--5231Chr05:19953587..19953611 (25 bp)
GAATAATTCACCTTATCGCGCGATC
NONE
Os.57509.1.A1_at--186--9691Chr05:19953647..19953671 (25 bp)
TCACGCACGCGCACAGAAAGACTTG
NONE
Os.57509.1.A1_at--347--5571Chr05:19953662..19953686 (25 bp)
GAAAGACTTGCCTGACTGAACTTCT
NONE
Os.57509.1.A1_at--838--1151Chr05:19953711..19953735 (25 bp)
AGTCGTGGAGCAACTGTGGCGCACA
NONE
Os.57509.1.A1_at--999--7511Chr05:19953757..19953781 (25 bp)
GTGGCAATACTGTGTCCGGTTCAAA
NONE
Os.57509.1.A1_at--850--6931Chr05:19953801..19953825 (25 bp)
GTAGAAAGGTCTGGTCCACGTCCAT
NONE
Target Sequence 
ATCCTTTTCTTCTCGTTTTAGTCATCGAATCAGTAATACCCACTTCTCGTTTTCATTCTACATTAATGAATGGTACAGTA
GTATTTTAATCTCCTGCTTAATTTGTACATTGGTGAATGGTGACCACAACGACTGACCGACTTATTCAAGAGACCCAACA
TACAGTAGTACTACTAGATAGGCTGATGGCGATTACTCTGATGCTTTACTGTAGCCCCACTAATCCTGTCCCTCCTCTGG
TCCGTCCAAAGCTCCAAATCCATACGACCCTGCACCTGCTGCCTGATCGAATTTGGAGTGCTAAAGACGATTCGAATAAT
TCACCTTATCGCGCGATCCGTCCCCACGGTTTGCACAAAAAGGGCCGCACGAGTCACGCACGCGCACAGAAAGACTTGCC
TGACTGAACTTCTGACCTGATGAAGAAGAAGAAGCAAAGTCGTGGAGCAACTGTGGCGCACAGCGGTGAAAATGCAGATC
AGTGTGGCAATACTGTGTCCGGTTCAAAAAATGTGATTAGAACAGTAGTAGAAAGGTCTGGTCCACGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57509.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis