Browse Element(s) Details


Os.57530.1.S1_at

Description gb:AJ491855.1
DB_XREF= gi:21912441
GEN=hkt9
TID=Os.57530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57530 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for putative sodium transporter (hkt9 gene).
PROD=putative sodium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4880011/11Cation transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48760Os.26461.1.S1_at11/116+29507826..29514167UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770Os.11281.1.S2_at11/116+29515245..29522984beta-lactamase family protein, expressed
LOC_Os06g48770Os.11281.1.S1_at10/116+29515245..29522984beta-lactamase family protein, expressed
LOC_Os06g48770Os.11281.1.S3_at10/116+29515245..29522984beta-lactamase family protein, expressed
LOC_Os06g48780Os.12291.1.S1_at11/116+29526365..2952795560S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780OsAffx.28176.1.S1_at9/116+29526365..2952795560S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48790OsAffx.5148.1.S1_x_at11/116+29529047..29532722hypothetical protein
LOC_Os06g48790OsAffx.19937.1.S1_at1/116+29529047..29532722hypothetical protein
LOC_Os06g48800Os.57530.1.S1_at11/116+29533236..29535555Cation transport protein, expressed
LOC_Os06g48800Os.57530.1.S1_x_at11/116+29533236..29535555Cation transport protein, expressed
LOC_Os06g48800Os.19896.2.S1_x_at8/116+29533236..29535555Cation transport protein, expressed
LOC_Os06g48810Os.2617.2.S1_a_at11/116+29537942..29540221high-affinity sodium transporter, putative, expressed
LOC_Os06g48820NANA6+29546213..29546692retrotransposon protein, putative, LINE subclass
LOC_Os06g48830OsAffx.28177.1.S1_at10/116+29553260..29554030hypothetical protein
LOC_Os06g48839NANA6+29557416..29558207NA

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0015081molecular_functionsodium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57530.1.S1_at--490--111Chr06:29534555..29534579 (25 bp)
ATTCTGCAGTGTTTGCAGGGCTAAC
LOC_Os06g48800
Os.57530.1.S1_at--476--10491Chr06:29534554..29534578 (25 bp)
TTCTGCAGTGTTTGCAGGGCTAACC
LOC_Os06g48800
Os.57530.1.S1_at--915--9471Chr06:29534553..29534577 (25 bp)
TCTGCAGTGTTTGCAGGGCTAACCT
LOC_Os06g48800
Os.57530.1.S1_at--648--9051Chr06:29534551..29534575 (25 bp)
TGCAGTGTTTGCAGGGCTAACCTCC
LOC_Os06g48800
Os.57530.1.S1_at--475--5011Chr06:29534550..29534574 (25 bp)
GCAGTGTTTGCAGGGCTAACCTCCC
LOC_Os06g48800
Os.57530.1.S1_at--280--4831Chr06:29533939..29533963 (25 bp)
GCTACAGCACCAGGATGGGATTGCT
LOC_Os06g48800
Os.57530.1.S1_at--706--3731Chr06:29533938..29533962 (25 bp)
CTACAGCACCAGGATGGGATTGCTT
LOC_Os06g48800
Os.57530.1.S1_at--1090--9791Chr06:29533937..29533961 (25 bp)
TACAGCACCAGGATGGGATTGCTTG
LOC_Os06g48800
Os.57530.1.S1_at--450--2151Chr06:29533936..29533960 (25 bp)
ACAGCACCAGGATGGGATTGCTTGC
LOC_Os06g48800
Os.57530.1.S1_at--867--691Chr06:29533910..29533934 (25 bp)
ATGAGAAGCCATACAGCTTCTCGGG
LOC_Os06g48800
Os.57530.1.S1_at--59--1691Chr06:29533904..29533928 (25 bp)
AGCCATACAGCTTCTCGGGGTGGTG
LOC_Os06g48800
Target Sequence 
ATTCTGCAGTGTTTGCAGGGCTAACCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAGTGCAAGGCAGGCA
GGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTT
GACAAAGTTGTTCTCAGCATGTCAAGATCACAAACAAATCGGCCCGGAAAGCGACGATAGAACAAGCAAGGGGAAACCAT
TCCTGAAGACGATGGCATTTTCACCACTAGCCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCG
ATCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTC
CACTGGCTACAGCTGCTCGAGACAGCTACAGCACCAGGATGGGATTGCTTGCCATGAGAAGCCATACAGCTTCTCGGGGT
GGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis