Browse Element(s) Details


Os.57543.1.S1_at

Description gb:AF345911.1
DB_XREF= gi:15824794
TID=Os.57543.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57543 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS-box protein FDRMADS3 mRNA, complete cds.
PROD=MADS-box protein FDRMADS3
FL= gb:AF345911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g018202/11MADS2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57543.1.S1_at--900--2951NONE
AAGGCCAGGTGCAACTTCCGCATTG
NONE
Os.57543.1.S1_at--878--7331NONE
GTGCAACTTCCGCATTGGAGGCTTT
NONE
Os.57543.1.S1_at--86--31NONE
ATTGGAGGCTTTCCGCCATGGATGC
NONE
Os.57543.1.S1_at--756--3491NONE
CATGGATGCTGAGCACCTTCAAGGC
NONE
Os.57543.1.S1_at--73--5091NONE
GCACCTTCAAGGCTTAAGATGATCA
NONE
Os.57543.1.S1_at--400--9411NONE
TCGTCGGGCCAACAAGTTGCCGATT
NONE
Os.57543.1.S1_at--1079--2811NONE
AAGTTGCCGATTGCACCGGGAATCA
NONE
Os.57543.1.S1_at--496--6591NONE
GATTGCACCGGGAATCATGGGAGCA
NONE
Os.57543.1.S1_at--1019--5151NONE
GCAACCTTGAATGAAATGGAAGCAT
NONE
Os.57543.1.S1_at--572--7411Chr07:469497..469521 (25 bp)
GTGTTTATACGCTAATTAACTGCAG
LOC_Os07g01820
Os.57543.1.S1_at--1100--5031Chr07:469476..469500 (25 bp)
GCAGATGCAAACTAATCAATCGAAT
LOC_Os07g01820
Target Sequence 
AAGGCCAGGTGCAACTTCCGCATTGGAGGCTTTCCGCCATGGATGCTGAGCACCTTCAAGGCTTAAGATGATCATCGGCG
TCGTCGTCGGGCCAACAAGTTGCCGATTGCACCGGGAATCATGGGAGCAACCTTGAATGAAATGGAAGCATTGGGATTGG
AAGCGGATAATATATATGAATCTCCTAAAAGGAAATGGACTCAAAAAAAAAAACCTAGCGATTAAGCTATTCTTATATAT
GCGTTTGCCTGCTGCTCCCTACCCTACAGGCTACATATGATTTGCAAGAAATTAATTATGAGCAAGGATCAGGATGTGTC
TTTGTGTAATCATCAGCACGTACCTAGTGCTTCCTACTGATATATATGCATGCAATTGTGTGCATATAAATATATTTGCA
TGCCATGCTCCCGTGATGGTTAATTAATTTATGATTGTGTTTATACGCTAATTAACTGCAGATGCAAACTAATCAATCGA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis