Browse Element(s) Details


Os.5767.1.S1_at

Description gb:AK069900.1
DB_XREF= gi:32979924
TID=Os.5767.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035E20, full insert sequence.
FL= gb:AK069900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0110011/11HMG box family protein, expressed
LOC_Os02g204101/11Guanylate-binding protein, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01070Os.6337.1.S1_at11/118+47929..51980expressed protein
LOC_Os08g01080Os.46922.1.S1_at10/118+52251..57016expressed protein
LOC_Os08g01090Os.25169.1.S1_at10/118+57228..61492B3 DNA binding domain containing protein, expressed
LOC_Os08g01100Os.5767.1.S1_at11/118+64999..66368HMG box family protein, expressed
LOC_Os08g01110Os.18580.1.S1_at7/118+71957..77877expressed protein
LOC_Os08g01110Os.51348.1.S1_x_at2/118+71957..77877expressed protein
LOC_Os08g01120Os.54382.1.S1_at10/118+79988..81789Sulfate transporter family protein, expressed
LOC_Os08g01130Os.15223.1.S1_a_at11/118+80898..85561XPG I-region family protein, expressed
LOC_Os08g01140Os.8012.1.S1_at11/118+89429..90590Cytochrome b561 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0006955biological_processimmune response
GO:0042306biological_processregulation of protein import into nucleus
GO:0000785cellular_componentchromatin
GO:0005856cellular_componentcytoskeleton
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5767.1.S1_at--1142--10091Chr08:65344..65368 (25 bp)
TAGGCCACCGGTCCAATGGATGGAT
LOC_Os08g01100
Os.5767.1.S1_at--649--10632Chr08:65309..65333 (25 bp)
TTCCTTCTCTTTTTGTAAATGGCGG
LOC_Os08g01100
Os.5767.1.S1_at--771--8351Chr08:65289..65313 (25 bp)
GGCGGATCCATCACATTGCTAGTAT
LOC_Os08g01100
Os.5767.1.S1_at--384--7491Chr08:65260..65284 (25 bp)
GTGGGAGCAGCAGTATCGATTGATT
LOC_Os08g01100
Os.5767.1.S1_at--503--2531Chr08:65208..65232 (25 bp)
AACTACTAGTGCTTGCAGTGTGACC
LOC_Os08g01100
Os.5767.1.S1_at--1127--5011Chr08:65194..65218 (25 bp)
GCAGTGTGACCTGCACATCAAGTGA
LOC_Os08g01100
Os.5767.1.S1_at--947--10011Chr08:65152..65176 (25 bp)
TAGACGACTTAATTATCCCTCTTTT
LOC_Os08g01100
Os.5767.1.S1_at--447--6611Chr08:65118..65142 (25 bp)
GATTGGAGTGCAACTTCTTCCCCAT
LOC_Os08g01100
Os.5767.1.S1_at--307--9511Chr08:65062..65086 (25 bp)
TCTCTGTCTCTATATGTTGCTTCCT
LOC_Os08g01100
Os.5767.1.S1_at--183--6671Chr08:65047..65071 (25 bp)
GTTGCTTCCTTGGTGAATTGACTCA
LOC_Os08g01100
Os.5767.1.S1_at--666--5711Chr08:65028..65052 (25 bp)
GACTCATGACTTGTATCTGATTTCA
LOC_Os08g01100
Target Sequence 
TAGGCCACCGGTCCAATGGATGGATGGATGGATAATTCCTTCTCTTTTTGTAAATGGCGGATCCATCACATTGCTAGTAT
GCTAGTGGGAGCAGCAGTATCGATTGATTCTGGTGGTGGTGATCTTCTAGTACTAGAACTACTAGTGCTTGCAGTGTGAC
CTGCACATCAAGTGAATGAATGNATGAATGATTAGACGACTTAATTATCCCTCTTTTTTTGGATTCGATTGGAGTGCAAC
TTCTTCCCCATTCCATTCTCAAGGGCTTCCTTCCTTTGCTGCTCTCTGTCTCTATATGTTGCTTCCTTGGTGAATTGACT
CATGACTTGTATCTGATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis