Browse Element(s) Details


Os.5780.1.S1_at

Description gb:AK064717.1
DB_XREF= gi:32974735
TID=Os.5780.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA, clone:Osc4 abundantly expressed at microspore stage
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E06, full insert sequence.
FL= gb:AK119794.1 gb:AK064717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4329011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5780.1.S1_at--614--7831Chr08:27231353..27231377 (25 bp)
GGTAATATTTGCAGCATCGTCTGAA
LOC_Os08g43290
Os.5780.1.S1_at--569--1271Chr08:27231665..27231773 (25 bp)
AGATCAACTGCTCTGCCTAAGACGA
LOC_Os08g43290
Os.5780.1.S1_at--598--9491Chr08:27231761..27231784 (24 bp)
TCTGCCTAAGACGAGACGAGAGTTA
LOC_Os08g43290
Os.5780.1.S1_at--1012--5711Chr08:27231774..27231798 (25 bp)
GACGAGAGTTAACCCCGGACGCCAT
LOC_Os08g43290
Os.5780.1.S1_at--761--3071Chr08:27231810..27231834 (25 bp)
AATCAAGGTGTTGACGAAGCCGTCG
LOC_Os08g43290
Os.5780.1.S1_at--50--6591Chr08:27231819..27231843 (25 bp)
GTTGACGAAGCCGTCGTTGTCTTCG
LOC_Os08g43290
Os.5780.1.S1_at--617--6631Chr08:27231834..27231858 (25 bp)
GTTGTCTTCGTGTCTCGTTTAGTAA
LOC_Os08g43290
Os.5780.1.S1_at--929--7431Chr08:27231843..27231867 (25 bp)
GTGTCTCGTTTAGTAAAATCTTCAG
LOC_Os08g43290
Os.5780.1.S1_at--858--431Chr08:27231860..27231884 (25 bp)
ATCTTCAGATTGTACTGCAGTTGCT
LOC_Os08g43290
Os.5780.1.S1_at--624--6271Chr08:27231888..27231912 (25 bp)
GATGTCGATGAATAATACCAGTAAG
LOC_Os08g43290
Os.5780.1.S1_at--889--2231Chr08:27231922..27231946 (25 bp)
ACAATCATGTAATGCCCGGTTGCTG
LOC_Os08g43290
Target Sequence 
GGTAATATTTGCAGCATCGTCTGAAGAAGCACAGGAGCAGGGGAGATATGGCGGCGAGCAAGGGGAACGCGGCGGCGGCG
GCGTGCGCGCTCGTGCTGGTGCTGCTGGCCGTGGGCGCGGAGGCGCAGGGCGGCGGCGGGGGGGAGTNCGTGCCGCAGCT
GAACAGGCTGCTGGCGTGCCGCGCGTACGCGGTGCCCGGCGCCGGTGACCCCAGCGCCGAGTGCTGCAGCGCGCTCAGCT
CCATCTCCCAGGGCTGCGCCTGCAGCGCCATCAGCATCATGAACAGCCTGCCTTCCAGATGCCACCTCAGCCAGATCAAC
TGCTCTGCCTAAGACGAGACGAGAGTTAACCCCGGACGCCATGGAAGAAGAATAATCAAGGTGTTGACGAAGCCGTCGTT
GTCTTCGTGTCTCGTTTAGTAAAATCTTCAGATTGTACTGCAGTTGCTATTGATGTCGATGAATAATACCAGTAAGTACT
ATGGAACAATCATGTAATGCCCGGTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis