Browse Element(s) Details


Os.5836.1.A1_x_at

Description gb:CB678786
DB_XREF= gi:29682511
DB_XREF=OSJNEf01G17.r
CLONE=OSJNEf01G17
TID=Os.5836.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.5836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J03.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2711011/11Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein
LOC_Os10g27110Os.5836.1.A1_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27110Os.5836.1.A1_x_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27120OsAffx.6780.1.S1_x_at11/1110+13961465..13962226lipase, putative, expressed
LOC_Os10g27140Os.26886.1.S1_x_at11/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140Os.26886.3.S1_x_at7/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140OsAffx.16244.1.S1_x_at1/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27150NANA10+13976237..13977918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27160NANA10+13981717..13982121hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5836.1.A1_x_at--819--4531Chr10:13957960..13957984 (25 bp)
GCCCGGAGTCGTTCATCGCGCCGGA
LOC_Os10g27110
Os.5836.1.A1_x_at--951--8391Chr10:13957877..13957901 (25 bp)
GGCGCTATCGCCAAGAAGAAGTGAC
LOC_Os10g27110
Os.5836.1.A1_x_at--1013--5351Chr10:13957863..13957887 (25 bp)
GAAGAAGTGACGTCACGGACAGAAT
LOC_Os10g27110
Os.5836.1.A1_x_at--47--8931Chr10:13957856..13957880 (25 bp)
TGACGTCACGGACAGAATGTTTTTT
LOC_Os10g27110
Os.5836.1.A1_x_at--822--3131Chr10:13957826..13957850 (25 bp)
AATTACTGTCTCCTAATTAGTGATT
LOC_Os10g27110
Os.5836.1.A1_x_at--3--131Chr10:13957811..13957835 (25 bp)
ATTAGTGATTAGCTTGGGTGGTTTA
LOC_Os10g27110
Os.5836.1.A1_x_at--39--10351Chr10:13957778..13957802 (25 bp)
TTAGTTAACCCGGTGGATCAACCTG
LOC_Os10g27110
Os.5836.1.A1_x_at--739--10451Chr10:13957774..13957798 (25 bp)
TTAACCCGGTGGATCAACCTGGAGC
LOC_Os10g27110
Os.5836.1.A1_x_at--38--7511Chr10:13957766..13957790 (25 bp)
GTGGATCAACCTGGAGCTTTTAATC
LOC_Os10g27110
Os.5836.1.A1_x_at--213--371Chr10:13957718..13957742 (25 bp)
ATAATTGCTTAGTTAGCTAGGTGAG
LOC_Os10g27110
Os.5836.1.A1_x_at--79--2871Chr10:13957636..13957660 (25 bp)
AAGTGAGGCCCTGGGATGCAATCAT
LOC_Os10g27110
Target Sequence 
GCCCGGAGTCGTTCATCGCGCCGGAGGAGGTGAGGAGCGGCGGCGGCGGCGGCAGCAGCAGCCGCCGCTACGACGGCGGC
GGCGGCGCTATCGCCAAGAAGAAGTGACGTCACGGACAGAATGTTTTTTTAATTAATTACTGTCTCCTAATTAGTGATTA
GCTTGGGTGGTTTAATTAATTATTAGTTAACCCGGTGGATCAACCTGGAGCTTTTAATCNCCATCANCAGCAAGTGTGGC
ANATAATTGCTTAGTTAGCTAGGTGAGNGTAATTTTTTGTTTTTTCNCTGTTTTTTTTTTGTTTGTTTGTTTCTTGNACT
TATNAAGTGAGGCCCTGGGATGCAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5836.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis