Browse Element(s) Details


Os.5854.1.S1_a_at

Description gb:AK069745.1
DB_XREF= gi:32979769
TID=Os.5854.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.5854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) coatomer delta subunit (P0460C04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027K10, full insert sequence.
FL= gb:AK069745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6171010/11Coatomer delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein
LOC_Os01g61680Os.28176.1.S1_at11/111+36013258..36014645expressed protein
LOC_Os01g61680Os.28176.2.S1_x_at7/111+36013258..36014645expressed protein
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5854.1.S1_a_at--282--6131Chr01:36028773..36028797 (25 bp)
GAGTGGTCCATTATTCTTGTTGATC
LOC_Os01g61710
Os.5854.1.S1_a_at--35--2611Chr01:36028644..36028767 (25 bp)
AACCGCAGTGGTTCTTTGGAGTTCA
LOC_Os01g61710
Os.5854.1.S1_a_at--784--8031Chr01:36028627..36028651 (25 bp)
GGAGTTCACTGTCCCTGCAGCTGAT
LOC_Os01g61710
Os.5854.1.S1_a_at--355--2511Chr01:36028597..36028621 (25 bp)
AACATTCTTCCCGATATCTGTTGGG
LOC_Os01g61710
Os.5854.1.S1_a_at--749--251Chr01:36028584..36028608 (25 bp)
ATATCTGTTGGGTTTTCTGCATCAA
LOC_Os01g61710
Os.5854.1.S1_a_at--524--8831NONE
TGATTTGAAGGTGACCGCCATCCGT
NONE
Os.5854.1.S1_a_at--763--9971Chr01:36027575..36027599 (25 bp)
TAGCCCACCAAAGTTTTCTCAGAGG
LOC_Os01g61710
Os.5854.1.S1_a_at--505--2031Chr01:36027531..36027555 (25 bp)
ACTACCAAGTGGTTTGACGCGCAAA
LOC_Os01g61710
Os.5854.1.S1_a_at--1001--7071Chr01:36027482..36027506 (25 bp)
GTAATTGCGCACATTTGCAGTACAT
LOC_Os01g61710
Os.5854.1.S1_a_at--1161--10711Chr01:36027423..36027447 (25 bp)
TTGCTCAGTGAGTTGTCCCGACGTG
LOC_Os01g61710
Os.5854.1.S1_a_at--817--3012Chr08:14959053..14959076 (23 bp)
AATGCATGCTGTTTTTCCTTTACAC
NONE
Target Sequence 
GAGTGGTCCATTATTCTTGTTGATCAATCAAACCGCAGTGGTTCTTTGGAGTTCACTGTCCCTGCAGCTGATCCATCAAC
ATTCTTCCCGATATCTGTTGGGTTTTCTGCATCAAATACATTTAGTGATTTGAAGGTGACCGCCATCCGTCCGCTGAGGG
AAGGTAGCCCACCAAAGTTTTCTCAGAGGAATCGATTGGTTACTTATAACTACCAAGTGGTTTGACGCGCAAATTAAAGT
TAGTTTGTTCCAGTCAAGTAATTGCGCACATTTGCAGTACATAGGAGCTTCTGNTTTTCTGCCAAGCTNAGATANCTTGC
TCAGTGAGTTGTCCCGACGTGGATAAATATGTGGTATACGTAATGCATGCTGTTTTTCCTTTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5854.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis