Browse Element(s) Details


Os.5862.1.S1_at

Description gb:AK071819.1
DB_XREF= gi:32981842
TID=Os.5862.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114N14, full insert sequence.
FL= gb:AK071819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5020010/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50149Os.36511.1.S1_at1/111+29150447..29150624NA
LOC_Os01g50160Os.9066.1.S1_s_at11/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50160Os.49647.1.S1_at8/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50170Os.50995.1.S1_at11/111+29162090..29163731Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g50180OsAffx.19542.3.S1_x_at10/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50180OsAffx.9949.1.S1_at1/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50190OsAffx.29949.1.S1_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50190OsAffx.29949.1.S1_x_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50200Os.5862.1.S1_at10/111+29174805..29176566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5862.1.S1_at--841--1511Chr01:29175299..29175323 (25 bp)
AGCAGCGGATGAACAGGGTGTTCCT
LOC_Os01g50200
Os.5862.1.S1_at--364--2311Chr01:29174966..29174990 (25 bp)
AAAGTGACGCACGTAACCACCGAGT
LOC_Os01g50200
Os.5862.1.S1_at--1069--6751Chr01:29174954..29174978 (25 bp)
GTAACCACCGAGTTGGGCCACCACA
LOC_Os01g50200
Os.5862.1.S1_at--985--8651Chr01:29174941..29174965 (25 bp)
TGGGCCACCACAGAGATGGGTCGTT
LOC_Os01g50200
Os.5862.1.S1_at--561--811Chr01:29174926..29174950 (25 bp)
ATGGGTCGTTCATGACTGGGACTTT
LOC_Os01g50200
Os.5862.1.S1_at--611--3511Chr01:29174916..29174940 (25 bp)
CATGACTGGGACTTTGGGTGATTTC
LOC_Os01g50200
Os.5862.1.S1_at--178--3691Chr01:29174905..29174929 (25 bp)
CTTTGGGTGATTTCAGTTTCGTACT
LOC_Os01g50200
Os.5862.1.S1_at--374--1211Chr01:29174891..29174915 (25 bp)
AGTTTCGTACTATATGCTGTCTTGA
LOC_Os01g50200
Os.5862.1.S1_at--479--251Chr01:29174880..29174904 (25 bp)
ATATGCTGTCTTGAGTACACCGTAA
LOC_Os01g50200
Os.5862.1.S1_at--720--7031Chr01:29174866..29174890 (25 bp)
GTACACCGTAATTGTTTTCCTTGCT
LOC_Os01g50200
Os.5862.1.S1_at--367--3451Chr01:29174804..29174828 (25 bp)
CAGTTTCATCTGTGATTGATTGCTA
NONE
Target Sequence 
AGCAGCGGATGAACAGGGTGTTCCTGGAGAAGGAGATGCGGCTGGCCGTGGCGGTGGAAGGGTACGACGACGACGTCGGG
GAGGGGACCGTGAAGGCGGAGGAGGTGGCGGCGAAGGTGCGGTGGCTGATGGAGTCCGACGGCGGGAGGGCGCTCCTGGA
GCGGACGCTGGCGGCCATGCGGCGGGCGAAGGCGGCGCTGCGCGACGGCGGCGAGTCGGAGGTGACGTTGGCGCGGCTGG
TGGAGTCGTGGAGGGAAGCGGCCAGCGCATGACGTGGGAAATGATTGAAGGATGATTGAATGAGGTGGTGGGCTGTGTTG
TTGGGTGGAGATTAAAGTGACGCACGTAACCACCGAGTTGGGCCACCACAGAGATGGGTCGTTCATGACTGGGACTTTGG
GTGATTTCAGTTTCGTACTATATGCTGTCTTGAGTACACCGTAATTGTTTTCCTTGCTCTTGGGGTAAAAAGAGCAGTAG
ACNAACGTATGATTTCAGTTTCATCTGTGATTGATTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis