Browse Element(s) Details


Os.5869.3.S1_x_at

Description gb:CB667246
DB_XREF= gi:29670971
DB_XREF=OSJNEd14H20.r
CLONE=OSJNEd14H20
TID=Os.5869.3
CNT=52
FEA=EST
TIER=Stack
STK=14
UG=Os.5869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H08, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3841011/11Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0009783cellular_componentphotosystem II antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5869.3.S1_x_at--820--3991Chr04:22617383..22617407 (25 bp)
CGTGGTCGCGCACCGCCGAGAACTT
LOC_Os04g38410
Os.5869.3.S1_x_at--147--4571Chr04:22617152..22617176 (25 bp)
GCGCCCTCGGCCTATGAGCAATCAA
LOC_Os04g38410
Os.5869.3.S1_x_at--741--4811Chr04:22617123..22617147 (25 bp)
GCTCTCGCTCGCCATGGATCTGACA
LOC_Os04g38410
Os.5869.3.S1_x_at--862--9491Chr04:22617121..22617145 (25 bp)
TCTCGCTCGCCATGGATCTGACACA
LOC_Os04g38410
Os.5869.3.S1_x_at--940--4791Chr04:22617117..22617141 (25 bp)
GCTCGCCATGGATCTGACACACAGA
LOC_Os04g38410
Os.5869.3.S1_x_at--647--4171Chr04:22617114..22617138 (25 bp)
CGCCATGGATCTGACACACAGAGTT
LOC_Os04g38410
Os.5869.3.S1_x_at--390--2191Chr04:22617099..22617123 (25 bp)
ACACAGAGTTGGGTTTCGCTTGCAT
LOC_Os04g38410
Os.5869.3.S1_x_at--215--2151Chr04:22617097..22617121 (25 bp)
ACAGAGTTGGGTTTCGCTTGCATGC
LOC_Os04g38410
Os.5869.3.S1_x_at--842--10831Chr04:22617091..22617115 (25 bp)
TTGGGTTTCGCTTGCATGCGCGCTT
LOC_Os04g38410
Os.5869.3.S1_x_at--328--7871Chr04:22617088..22617112 (25 bp)
GGTTTCGCTTGCATGCGCGCTTCGT
LOC_Os04g38410
Os.5869.3.S1_x_at--718--531Chr04:22617058..22617082 (25 bp)
ATCGCTAGCTGTTGCATCGATCGGG
LOC_Os04g38410
Target Sequence 
CGTGGTCGCGCACCGCCGAGAACTTCTCCAACGCCACCGGCGAGCAGGGCTACCCCGGCGGCAAGTTCTTCGACCCGCTC
GGCCTCGGCGGCGAGACCAGGGACGGCGTNTACATCCCGGACACCGACAAGCTCGACCGGCTCAAGCTCGCCGAGATCAA
GCACGCCCGCCTCGCCATGCTCGCCATGCTCATCTTNTACTTCGAGGCCGGCCAGGGCAAGACGCCGCTCGGCGCCCTCG
GCCTATGAGCAATCAACCCCGCTCTCGCTCGCCATGGATCTGACACACAGAGTTGGGTTTCGCTTGCATGCGCGCTTCGT
GTTTGATCGCTAGCTGTTGCATCGATCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5869.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis