Browse Element(s) Details


Os.5914.1.S1_at

Description gb:AK058777.1
DB_XREF= gi:32968795
TID=Os.5914.1
CNT=56
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0027L23.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B06, full insert sequence.
FL= gb:AK058777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4254010/11NADH-ubiquinone oxidoreductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42490Os.18549.1.S1_at11/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57416.1.S1_x_at2/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57414.1.S1_x_at1/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42500Os.14875.1.S1_at11/1110+22590828..22593204plastid-lipid associated protein 3, chloroplast precursor, putative, expressed
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5914.1.S1_at--707--6391Chr10:22609464..22609488 (25 bp)
GATCGAGACCGCCAAGATCATCCGC
LOC_Os10g42540
Os.5914.1.S1_at--313--8071Chr10:22609611..22609733 (25 bp)
GGAGCTGCACGATCCCAAGAAGGTG
LOC_Os10g42540
Os.5914.1.S1_at--9--6231Chr10:22609737..22609761 (25 bp)
GAGGCCGACGAGTAGCTTTGCTGCT
LOC_Os10g42540
Os.5914.1.S1_at--875--3891NONE
CTGGGCTGGAGAGGTTATCTTTCTA
NONE
Os.5914.1.S1_at--326--5471Chr10:22611013..22611037 (25 bp)
GAACTGCTGCAGTCCTTATTTTGAC
LOC_Os10g42540
Os.5914.1.S1_at--697--5831Chr10:22611035..22611059 (25 bp)
GACCTCTCTAGTTGCTCATGGATTT
LOC_Os10g42540
Os.5914.1.S1_at--278--3611Chr10:22611085..22611109 (25 bp)
CATTGTTGTGTGTTGCCTGTATTTT
LOC_Os10g42540
Os.5914.1.S1_at--160--8771Chr10:22611102..22611126 (25 bp)
TGTATTTTTCCCTGCCCGTTCTATA
LOC_Os10g42540
Os.5914.1.S1_at--1090--4531Chr10:22611115..22611139 (25 bp)
GCCCGTTCTATAAGAGCCGAGCAAA
LOC_Os10g42540
Os.5914.1.S1_at--189--9171Chr10:22611158..22611182 (25 bp)
TGCCTTGTTCTTGTACTCAACGATA
LOC_Os10g42540
Os.5914.1.S1_at--649--10331Chr10:22611192..22611216 (25 bp)
TTTAGTTTTCATTTACCCTGCGCCA
LOC_Os10g42540
Target Sequence 
GATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGCATCGAGGGCGTCAACCACCACCAGAAGTGCC
GCCACCTCGTCGACCAGTACCTCGAGGCCACCCGCGGCGTCGGATGGGGCAAGGACGCCCGCCCNGCCGGAGCTGCACGA
TCCCAAGAAGGTGGTTGAGGCCGACGAGTAGCTTTGCTGCTGCTGCTGTTCCTGGGCTGGAGAGGTTATCTTTCTATTGG
ATTTGAAAGGAGTAAAAATGAACTGCTGCAGTCCTTATTTTGACCTCTCTAGTTGCTCATGGATTTACAATAAATGATGA
TGTCGAAGTAACATTGTTGTGTGTTGCCTGTATTTTTCCCTGCCCGTTCTATAAGAGCCGAGCAAATACATGCTTGAATT
TATCTGCCTTGTTCTTGTACTCAACGATATGAATGATATTTAGTTTTCATTTACCCTGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis