Browse Element(s) Details


Os.6.1.S1_x_at

Description gb:D12626.1
DB_XREF= gi:303834
TID=Os.6.1
CNT=679
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for 21kd polypeptide, complete cds.
PROD=21kd polypeptide
FL= gb:D12626.1 gb:AK105453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g439009/11Translationally-controlled tumor protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43860Os.38169.1.S1_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.1.S1_a_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.2.S1_at8/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43870Os.20602.2.S1_x_at10/1111+25986362..25988536hAT family dimerisation domain containing protein
LOC_Os11g43880Os.47130.4.A1_x_at4/1111+25990368..25990691retrotransposon protein, putative, unclassified
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein
LOC_Os11g43900Os.6.1.S1_a_at11/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43900Os.6.1.S1_x_at9/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43910NANA11+26007706..26008029hypothetical protein
LOC_Os11g43920OsAffx.7401.1.S1_at11/1111+26011205..26011724hypothetical protein
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6.1.S1_x_at--28--2691Chr11:26005016..26005040 (25 bp)
AAGCTGTGAAGGTGGTCGACATTGT
LOC_Os11g43900
Os.6.1.S1_x_at--857--3591Chr11:26004997..26005021 (25 bp)
CATTGTGGACACCTTCCGTCTTCAG
LOC_Os11g43900
Os.6.1.S1_x_at--660--5151Chr11:26004883..26004907 (25 bp)
GCAACCTCCTTTTGACAAGAAGCAG
LOC_Os11g43900
Os.6.1.S1_x_at--426--7311Chr11:26004426..26004450 (25 bp)
GTGCTGAGCGGTTCCTTCTGCTCGA
LOC_Os11g43900
Os.6.1.S1_x_at--666--4312Chr11:26033747..26033772 (25 bp)
CCTTCTGCTCGACACTGATGTTTTA
NONE
Os.6.1.S1_x_at--1064--6271NONE
GATGTTTTATCTATCGCAGTCCGCC
NONE
Os.6.1.S1_x_at--853--8592Chr11:26033795..26033819 (25 bp)
TGGTCTAGTCTATGGTTGTCAGTTG
NONE
Os.6.1.S1_x_at--688--7111Chr11:26004349..26004373 (25 bp)
GTCAGTTGACTCGATATGGTCTAAT
LOC_Os11g43900
Os.6.1.S1_x_at--103--271Chr11:26004336..26004360 (25 bp)
ATATGGTCTAATGTTGGTGTCGGAA
LOC_Os11g43900
Os.6.1.S1_x_at--1030--10211Chr11:26004251..26004275 (25 bp)
TATTGGATTCATGAGCTCCTTAAAT
LOC_Os11g43900
Os.6.1.S1_x_at--26--10871NONE
TTGGAACGGATATTAATTTGCTTTG
NONE
Target Sequence 
AAGCTGTGAAGGTGGTCGACATTGTGGACACCTTCCGTCTTCAGGAGCAACCTCCTTTTGACAAGAAGCAGTTTGTGACC
TTCATGAAGCGCTACATCAAGAACCTCTCCGCCAAGCTGGATGCGGAAAAGCAAGAGGAATTCAAGAAGAACATTGAGGG
TGCCACCAAGTACTTGCTTGGAAAGCTCAAGGACCTTCAGTTCTTTGTTGGTGAGAGCATGCATGATGATGGCGGCTTGG
TGTTTGCCTACTACAAGGACGGAGCCACCGACCCAACCTTCCTTTACNTTCNTCNTCNANTGGGCTGAAGGAGGTCAAGT
GCTGAGCGGTTCCTTCTGCTCGACACTGATGTTTTATCTATCGCAGTCCGCCGNTATTTTTGGTCTAGTCTATGGTTGTC
AGTTGACTCGATATGGTCTAATGTTGGTGTCGGAAACAACTATCGTTTGCTTGTTATGGATGTTGAGATGAGTCCTTTTA
AAAAAACCTCCGGATTATTGGATTCATGAGCTCCTTAAATGTTTGGAACGGATATTAATTTGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis