Browse Element(s) Details


Os.6019.1.S1_at

Description gb:AK060755.1
DB_XREF= gi:32970773
TID=Os.6019.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-H01, full insert sequence.
FL= gb:AK060755.1 gb:AK065582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0157011/11expressed protein
LOC_Os12g0156011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein
LOC_Os11g01550Os.56072.1.S1_at7/1111+313616..314451LOB domain protein 12, putative, expressed
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6019.1.S1_at--359--2032Chr12:339532..339556 (25 bp)
ACTAGAATCTTCTTTGCAGGCTCAT
LOC_Os12g01560
Os.6019.1.S1_at--148--8052Chr12:339930..339954 (25 bp)
GGAGATGACAACAACAAGTGTCTAA
LOC_Os12g01560
Os.6019.1.S1_at--169--5352Chr12:339978..340002 (25 bp)
GAAGATTATAGGAGTGCAACCACAG
LOC_Os12g01560
Os.6019.1.S1_at--322--7352Chr12:339991..340015 (25 bp)
GTGCAACCACAGACTACGGCATGAT
LOC_Os12g01560
Os.6019.1.S1_at--348--5712Chr12:340002..340026 (25 bp)
GACTACGGCATGATGGACAAGGCGA
LOC_Os12g01560
Os.6019.1.S1_at--287--4372Chr12:340116..340140 (25 bp)
CCAACGATATTCAGGAGACAGTACG
LOC_Os12g01560
Os.6019.1.S1_at--1121--5972Chr12:340130..340154 (25 bp)
GAGACAGTACGTTCCTCTGACGAAA
LOC_Os12g01560
Os.6019.1.S1_at--624--9752Chr12:340285..340309 (25 bp)
TAATTTGGCCAAATTTCTTCTTTGT
LOC_Os12g01560
Os.6019.1.S1_at--354--9572Chr12:340300..340324 (25 bp)
TCTTCTTTGTTAACTTGTGGGTGTC
LOC_Os12g01560
Os.6019.1.S1_at--490--3612Chr12:340313..340337 (25 bp)
CTTGTGGGTGTCTAAGTAGGTATAA
LOC_Os12g01560
Os.6019.1.S1_at--430--1012Chr12:340330..340354 (25 bp)
AGGTATAAGTGCACAGTACTTGGCC
LOC_Os12g01560
Target Sequence 
ACTAGAATCTTCTTTGCAGGCTCATCACCTGCCCATTCCTGGGCTAGCAACTGGGGAGGAGATGACAACAACAAGTGTCT
AAACGAAACAGAACCAATTCAGATAGAAGATTATAGGAGTGCAACCACAGACTACGGCATGATGGACAAGGCGAAGGAGA
TNTTTGGAACANTGGAACCAAAGGGCATACATGTTCAGATACTGAACATCACCCAGCTTTNTGAGTACCGCAAGGACGCC
CATCCAACGATATTCAGGAGACAGTACGTTCCTCTGACGAAAGAGCAGATTGCAAACCCGAGCATCTACGCAGACTGCAC
GCATTGGTGCCTCCCTGGAGTTCCTGATGTNTGGAACGAGTTCTTGTATGCNTACNTNATGCACAAATGATATATGTATA
ATAATGTAANCTTAATTTGGCCAAATTTCTTCTTTGTTAACTTGTGGGTGTCTAAGTAGGTATAAGTGCACAGTACTTGG
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis