Browse Element(s) Details


Os.6097.2.S1_x_at

Description gb:AK058476.1
DB_XREF= gi:32968494
TID=Os.6097.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU068068(C11777),AU166380(C11777)~similar to Arabidopsis thaliana chromosome 1, At1g09920~unknown protein (P0047B07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C04, full insert sequence.
FL= gb:AK058476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4639011/11TRAF-type zinc finger, putative, expressed
LOC_Os01g117501/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6097.2.S1_x_at--166--7991Chr07:27683865..27683889 (25 bp)
GGATGCTTGCATGCCAATATTGTGA
LOC_Os07g46390
Os.6097.2.S1_x_at--225--7371Chr07:27683886..27683910 (25 bp)
GTGACTTTGAACTACCTGCAGCTGA
LOC_Os07g46390
Os.6097.2.S1_x_at--1108--2131Chr07:27684049..27684073 (25 bp)
ACAGAATATTGTCAGCCTTGCAGGA
LOC_Os07g46390
Os.6097.2.S1_x_at--595--6611Chr07:27684096..27684120 (25 bp)
GATTGGACACGACATCCAGTTCCAT
LOC_Os07g46390
Os.6097.2.S1_x_at--570--10611Chr07:27684120..27684144 (25 bp)
TTCCCAACCCATTGTTGCTTCAGAA
LOC_Os07g46390
Os.6097.2.S1_x_at--402--5111Chr07:27684391..27684415 (25 bp)
GCACACTCATGGCTTACAACGCAAG
LOC_Os07g46390
Os.6097.2.S1_x_at--727--91Chr07:27684452..27684476 (25 bp)
ATTCTGGTTGGATCAGTTCTGCTAA
LOC_Os07g46390
Os.6097.2.S1_x_at--609--2231Chr07:27684536..27684560 (25 bp)
AAATTCCTTCGTAGCCTATGGGCAG
LOC_Os07g46390
Os.6097.2.S1_x_at--29--7611Chr07:27684560..27684584 (25 bp)
GGGCAGAGATCCTTGAACTACAGTT
LOC_Os07g46390
Os.6097.2.S1_x_at--55--1031Chr07:27684633..27684657 (25 bp)
AGGTATTTCTACATGCTGGCAGCTG
LOC_Os07g46390
Os.6097.2.S1_x_at--591--3032Chr07:27684713..27684737 (25 bp)
AATGCCATCTGTTTTGTTGTTGTCT
LOC_Os07g46390
Target Sequence 
GGATGCTTGCATGCCAATATTGTGACTTTGAACTACCTGCAGCTGATATTTATGAGCATCAGGACGTGTGTGGGAATCGA
ACAGAATATTGTCAGCCTTGCAGGAAGTATGTCAGACTGCGGGAACAGATTGGACACGACATCCAGTTCCATTCCCAACC
CATTGTTGCTTCAGAATCTTCAAGTGACAGAAGCACGCTGGAAGAAGAAGAGAGTTATCCAGCAGAAGAACAACCAGTAC
GACCCAAGCACACTCATGGCTTACAACGCAAGCAATTTCTTGTCACAATTGTGATAGCTGGAATTTCAATTCTGGTTGGA
TCAGTTCTGCTAAAAAAGGGGTGGTTATCATGATATTTCCAACATAAACATGAATTTGCCTTCTTAATGTGCAAATTCCT
TCGTAGCCTATGGGCAGGGCAGAGATCCTTGAACTACAGTTTGAAGTCATTGTAGGAATGACCTGACTGATATGTTTTTT
TTTACCAGAAGGTATTTCTACATGCTGGCAGCTGGTAATCTATGTAAAAATGTTATTTACAAGTACGAGGCTTACTTTTA
CAAGGGATCAATGCCATCTGTTTTGTTGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6097.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis