Browse Element(s) Details


Os.6153.1.S1_at

Description gb:AK066161.1
DB_XREF= gi:32976179
TID=Os.6153.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.6153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052F22, full insert sequence.
FL= gb:AK066161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0703011/11arginyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06990Os.15797.1.S1_at11/115+3649022..3651769protein kinase, putative, expressed
LOC_Os05g07000Os.50563.1.S1_at11/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07000Os.3748.1.S1_at1/115+3652046..3656263RNA recognition motif family protein, expressed
LOC_Os05g07010OsAffx.4266.1.S1_at11/115+3657667..3659300myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g07020OsAffx.14577.1.S1_at10/115+3659900..3663746hypothetical protein
LOC_Os05g07020Os.53408.1.A1_at1/115+3659900..3663746hypothetical protein
LOC_Os05g07030Os.6153.1.S1_at11/115+3667973..3675645arginyl-tRNA synthetase family protein, expressed
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g07060Os.54555.1.S1_at10/115+3693797..3694910Fasciclin domain containing protein, expressed
LOC_Os05g07070Os.19023.1.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.1.S1_s_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_s_at10/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006420biological_processarginyl-tRNA aminoacylation
GO:0004814molecular_functionarginine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6153.1.S1_at--226--6831Chr05:3674171..3674195 (25 bp)
GTTTACCTTCAGTATGCTCATGCTC
LOC_Os05g07030
Os.6153.1.S1_at--5--4811Chr05:3674192..3674216 (25 bp)
GCTCGCATTTGCTCTATAATCAGGA
LOC_Os05g07030
Os.6153.1.S1_at--1141--1091Chr05:3674434..3674458 (25 bp)
AGTGGTGCCATTTCTCTTGATCATC
LOC_Os05g07030
Os.6153.1.S1_at--523--691Chr05:3674462..3674486 (25 bp)
ATGAGCGTGTCTTGGGACTGTACCT
LOC_Os05g07030
Os.6153.1.S1_at--335--8191Chr05:3674939..3674963 (25 bp)
GGAAGAGGCGTGCACCAACCTACTT
LOC_Os05g07030
Os.6153.1.S1_at--931--2051Chr05:3674960..3674984 (25 bp)
ACTTCCGAATGTCCTGTGCGAGTAC
LOC_Os05g07030
Os.6153.1.S1_at--20--6091Chr05:3674979..3675003 (25 bp)
GAGTACCTGTACAACCTTTCTGAAA
LOC_Os05g07030
Os.6153.1.S1_at--994--971Chr05:3675234..3675258 (25 bp)
AGGAGACAAGCCGACTGCTGCTCTG
LOC_Os05g07030
Os.6153.1.S1_at--221--6351Chr05:3675277..3675301 (25 bp)
GATGCGACAATGCTTTGAGCTGCTC
LOC_Os05g07030
Os.6153.1.S1_at--603--5891Chr05:3675293..3675317 (25 bp)
GAGCTGCTCGGAATTACACCAGTTT
LOC_Os05g07030
Os.6153.1.S1_at--587--2191Chr05:3675355..3675379 (25 bp)
ACAAACTTTCTTTCATGGTTGCAGT
LOC_Os05g07030
Target Sequence 
GTTTACCTTCAGTATGCTCATGCTCGCATTTGCTCTATAATCAGGAAATCCAACAAGGATGTAGAAGAGCTGAAAATGAG
TGGTGCCATTTCTCTTGATCATCCAGATGAGCGTGTCTTGGGACTGTACCTGATCCGATTTGCAGAGGTTGTGGAAGAGG
CGTGCACCAACCTACTTCCGAATGTCCTGTGCGAGTACCTGTACAACCTTTCTGAAATGTTCACAAGATTTTACACCAAC
TGCCAGGTGGTTGGATCGCCCGAGGAGACAAGCCGACTGCTGCTCTGCCAAGCGACGGCGGTCGTGATGCGACAATGCTT
TGAGCTGCTCGGAATTACACCAGTTTACAAGCTGTGATTGACATTTCGATATCCATTTTTCATACAAACTTTCTTTCATG
GTTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis