Browse Element(s) Details


Os.6154.1.S1_a_at

Description gb:AK066207.1
DB_XREF= gi:32976225
TID=Os.6154.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative methionine aminopeptidase (OSJNBb0091N21.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056N09, full insert sequence.
FL= gb:AK066207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3647011/11methionine aminopeptidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36430NANA10+19160027..19166462retrotransposon protein, putative, unclassified
LOC_Os10g36440Os.28943.1.S1_x_at2/1110+19167086..19170306retrotransposon protein, putative, unclassified
LOC_Os10g36450Os.47130.4.A1_x_at1/1110+19171247..19171573retrotransposon protein, putative, unclassified
LOC_Os10g36450Os.37083.2.S1_at1/1110+19171247..19171573retrotransposon protein, putative, unclassified
LOC_Os10g36460NANA10+19175966..19179679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36470Os.6154.1.S1_a_at11/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36470OsAffx.28284.1.S1_at3/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36490Os.17209.1.S1_at11/1110+19187274..19195752tubulin folding cofactor D, putative, expressed
LOC_Os10g36480Os.14040.1.S1_at11/1110+19195983..19198906expressed protein
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6154.1.S1_a_at--148--9791Chr10:19186213..19186237 (25 bp)
TAAGTCTTACTGTGGTCATGGCATA
LOC_Os10g36470
Os.6154.1.S1_a_at--443--10091Chr10:19186236..19186260 (25 bp)
TAGGAGAATTGTTCCACTGTGCCCC
LOC_Os10g36470
Os.6154.1.S1_a_at--51--5351Chr10:19186835..19186859 (25 bp)
GAAGTTTTGACAGCGCGATTACCGT
LOC_Os10g36470
Os.6154.1.S1_a_at--327--9611Chr10:19186859..19186883 (25 bp)
TCATCACCTGATGTCTTTCCATGGT
LOC_Os10g36470
Os.6154.1.S1_a_at--771--10291Chr10:19186874..19186898 (25 bp)
TTTCCATGGTTGAAGCCGTGACGCC
LOC_Os10g36470
Os.6154.1.S1_a_at--671--8931Chr10:19186892..19186916 (25 bp)
TGACGCCATTGCTCCAGGCATTATG
LOC_Os10g36470
Os.6154.1.S1_a_at--852--9551Chr10:19186980..19187004 (25 bp)
TCTTTTTATCATTCAGTTGCCCAAC
LOC_Os10g36470
Os.6154.1.S1_a_at--687--5391Chr10:19187010..19187034 (25 bp)
GAAGCAGATATTGTCCCAGTGATAA
LOC_Os10g36470
Os.6154.1.S1_a_at--203--6791Chr10:19187040..19187064 (25 bp)
GTTAGTTCTGACGACTTGCTGCAAC
LOC_Os10g36470
Os.6154.1.S1_a_at--220--2651Chr10:19187062..19187086 (25 bp)
AACCACTGTTCACCTAGCAAGTTGT
LOC_Os10g36470
Os.6154.1.S1_a_at--1021--5171Chr10:19187078..19187102 (25 bp)
GCAAGTTGTTTCTGGCTGTGTTAAG
LOC_Os10g36470
Target Sequence 
TAAGTCTTACTGTGGTCATGGCATAGGAGAATTGTTCCACTGTGCCCCAAATATTCCTCATTATTCAAGAAACAAGGCCG
TGGGTATAATGAAAGCTGGNACAAACATTTACNAATTGAGCCAATGATAAACACAGGAGTTTGGCATGACCNGTNCTATG
GCCTGATGAGTGGACAGCNAGTGACTGCNAGATGGTAAACGGAGTGCTCAATTTGAGCACNACCCTTTTGGTGACTGAAA
CNAGGAGTTGAAGTTTTGACAGCGCGATTACCGTCATCACCTGATGTCTTTCCATGGTTGAAGCCGTGACGCCATTGCTC
CAGGCATTATGCACAAACTAGCAAGTGATACGAATACAATGTGGTCAATGGGACAACACAATTTTTCAATTTACTCTTTT
TATCATTCAGTTGCCCAACTCTCCGAAGCAGATATTGTCCCAGTGATAATACCTGTTAGTTCTGACGACTTGCTGCAACC
ACTGTTCACCTAGCAAGTTGTTTCTGGCTGTGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6154.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis