Browse Element(s) Details


Os.623.1.S1_x_at

Description gb:AK062458.1
DB_XREF= gi:32972476
TID=Os.623.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671B11.14 (P0671B11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D01, full insert sequence.
FL= gb:AK062458.1 gb:AK102403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0964011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g106901/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09620Os.49042.1.A1_s_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.20244.1.S1_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.37438.1.S1_at1/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.623.1.S1_x_at--876--8791Chr01:4970048..4970072 (25 bp)
TGTTCTTGTGGTTCTTGGCCTGCCA
LOC_Os01g09640
Os.623.1.S1_x_at--361--5591Chr01:4970003..4970027 (25 bp)
GAAATGCTCCAGCTGCGGGAACAAT
LOC_Os01g09640
Os.623.1.S1_x_at--714--7612Chr05:5851336..5851360 (25 bp)
GGGAACAATGGCCACAACTCCAGGA
LOC_Os05g10690
Os.623.1.S1_x_at--781--4671Chr01:4969866..4969890 (25 bp)
GCGGTGCGCCTCTGAAGAAGTGCTT
LOC_Os01g09640
Os.623.1.S1_x_at--222--1131Chr01:4969848..4969872 (25 bp)
AGTGCTTCAGCATGGAGTGCCTATC
LOC_Os01g09640
Os.623.1.S1_x_at--467--1451Chr01:4969707..4969731 (25 bp)
AGAAGATGGCCAACGGGTACCTCTC
LOC_Os01g09640
Os.623.1.S1_x_at--1066--4051Chr01:4969682..4969706 (25 bp)
CGATGGCCTCATGGCGAGAGCTCAG
LOC_Os01g09640
Os.623.1.S1_x_at--427--1411Chr01:4969631..4969655 (25 bp)
AGACATATGGTTTGTGCATGCTTCA
LOC_Os01g09640
Os.623.1.S1_x_at--296--4991Chr01:4969616..4969640 (25 bp)
GCATGCTTCACTAATTTGTTGTGGT
LOC_Os01g09640
Os.623.1.S1_x_at--324--10451Chr01:4969591..4969615 (25 bp)
TTAGCACTAATTACAGCCACCTGAC
LOC_Os01g09640
Os.623.1.S1_x_at--552--4411Chr01:4969576..4969600 (25 bp)
GCCACCTGACAGTGATCTAATCATC
LOC_Os01g09640
Target Sequence 
TGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACT
CCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTG
TTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTC
GCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGG
TGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAG
AAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTG
ACAGTGATCTAATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.623.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis