Browse Element(s) Details


Os.6234.1.S1_at

Description gb:AK100492.1
DB_XREF= gi:32985701
TID=Os.6234.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098I05, full insert sequence.
FL= gb:AK100492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4104010/11DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41110Os.33948.1.S1_at11/114+24160698..24167305N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6234.1.S1_at--866--10171Chr04:24133932..24133956 (25 bp)
TATAAGTGTCTTCGCAATTATCAAG
LOC_Os04g41040
Os.6234.1.S1_at--705--7451Chr04:24133927..24133951 (25 bp)
GTGTCTTCGCAATTATCAAGATAAC
LOC_Os04g41040
Os.6234.1.S1_at--572--1251Chr04:24133909..24133933 (25 bp)
AGATAACTTCAAACCTTATTAGATA
LOC_Os04g41040
Os.6234.1.S1_at--233--6471Chr04:24133888..24133912 (25 bp)
GATAACTAATTGAATGGACTCCACA
LOC_Os04g41040
Os.6234.1.S1_at--980--5271Chr04:24133877..24133901 (25 bp)
GAATGGACTCCACATGCAGATGTTT
LOC_Os04g41040
Os.6234.1.S1_at--1028--111Chr04:24133597..24133621 (25 bp)
ATTCATTTCCTGTAGTAGAAACACT
LOC_Os04g41040
Os.6234.1.S1_at--606--10651Chr04:24133591..24133615 (25 bp)
TTCCTGTAGTAGAAACACTCGTCAG
LOC_Os04g41040
Os.6234.1.S1_at--1110--8731Chr04:24133587..24133611 (25 bp)
TGTAGTAGAAACACTCGTCAGCAAG
LOC_Os04g41040
Os.6234.1.S1_at--833--9551Chr04:24133406..24133430 (25 bp)
TCTTTCGTGCCTGCCTGTATGATGT
LOC_Os04g41040
Os.6234.1.S1_at--107--4011Chr04:24133401..24133425 (25 bp)
CGTGCCTGCCTGTATGATGTTTGTT
LOC_Os04g41040
Os.6234.1.S1_at--1071--8491Chr04:24133366..24133390 (25 bp)
TGGCATAAGAATGCCTTCCGGGACC
NONE
Target Sequence 
TATAAGTGTCTTCGCAATTATCAAGATAACTTCAAACCTTATTAGATAACTAATTGAATGGACTCCACATGCAGATGTTT
CNNNNNNCTNNNNNNNNNNNNNANNNNNNNNNNNNNNGANNNNNANNNNGTNNNANNNANNCAGCTCCCCCGGATTCAAA
TTACGGACCCAATAGCAAGATATTACGGCATGAAGCGTGGGCAAGTTGTAAAGATCATCCGTGCTAGTGAGACCGCTGGA
AGATATGTGACGTACCGTTATGTGGTGTGATCTTCACTACATTTCACGCTTGGCCTATGCGACGAATATTACCAGTGAAA
ATCACTCTGTTGCTAATTCATTTCCTGTAGTAGAAACACTCGTCAGCAAGTAACAGAAGTGCTGGGGTGCCTTGTTTCTC
TTTGTTGAGCTTGTTTGGCATAGCGGTGTTAGCACTAGACGTAGGTTTCTGTATCCGTGTTCCATTTCACCCTACCAAAT
CATTTGTGGCTATCAGAAATGTGTTTGATTGGGTGGGTCTATTTCATCTTTCGTGCCTGCCTGTATGATGTTTGTTTGAT
TGAAAATGGCATAAGAATGCCTTCCGGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis