Browse Element(s) Details


Os.625.1.S1_at

Description gb:AK100731.1
DB_XREF= gi:32985940
TID=Os.625.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pollen specific protein SF21 (P0671B11.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117I22, full insert sequence.
FL= gb:AK100731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0967011/11Pollen-specific protein SF21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.625.1.S1_at--83--10011Chr01:4979647..4979671 (25 bp)
TAGACCGGAGATATTGCGCCCTAGT
LOC_Os01g09670
Os.625.1.S1_at--143--1831Chr01:4979476..4979500 (25 bp)
ACGCGATGTTGATCCCCATGGAGTA
LOC_Os01g09670
Os.625.1.S1_at--667--8631Chr01:4979443..4979467 (25 bp)
TGGGATATGGGCTCTACAGACCTTC
LOC_Os01g09670
Os.625.1.S1_at--408--8971Chr01:4979389..4979413 (25 bp)
TGAACCCATTCTGTATATCGCCTGA
LOC_Os01g09670
Os.625.1.S1_at--116--5491Chr01:4979366..4979390 (25 bp)
GAACTTCTGTCACCGGAGAGCATGG
LOC_Os01g09670
Os.625.1.S1_at--495--2751Chr01:4979321..4979345 (25 bp)
AAGACTCGGATCTCGCTCAAAGTTT
LOC_Os01g09670
Os.625.1.S1_at--87--9011Chr01:4979279..4979303 (25 bp)
TGAATCCTTGATGGCCTGACAATAC
LOC_Os01g09670
Os.625.1.S1_at--215--8171Chr01:4979240..4979264 (25 bp)
GGAACACTGCATGGGCTAGTCTGAA
LOC_Os01g09670
Os.625.1.S1_at--718--5211Chr01:4979218..4979242 (25 bp)
GAATTCAGATGGTCACTGCCAGCAA
LOC_Os01g09670
Os.625.1.S1_at--540--9191Chr01:4979202..4979226 (25 bp)
TGCCAGCAAGTTTTGGTACCTCCAG
LOC_Os01g09670
Os.625.1.S1_at--143--7851Chr01:4979188..4979212 (25 bp)
GGTACCTCCAGTGATGCAGCTAATG
LOC_Os01g09670
Target Sequence 
TAGACCGGAGATATTGCGCCCTAGTCNGAGGTTCNAGGCATGCGGGTCACTCGTCACCGAGGAGCAACCGCACGCGATGT
TGATCCCCATGGAGTACTTCCTCATGGGATATGGGCTCTACAGACCTTCCCAGCTGGATAGCAGCCCCCGGAGCACACTG
AACCCATTCTGTATATCGCCTGAACTTCTGTCACCGGAGAGCATGGGAGTGAAGCTGAAGCCCATCAAGACTCGGATCTC
GCTCAAAGTTTAGCAATTGGCAAATGAATGAATCCTTGATGGCCTGACAATACAAGCTCATGAAGGTGGAACACTGCATG
GGCTAGTCTGAATTCAGATGGTCACTGCCAGCAAGTTTTGGTACCTCCAGTGATGCAGCTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis