Browse Element(s) Details


Os.6282.1.S1_at

Description gb:AK062099.1
DB_XREF= gi:32972117
TID=Os.6282.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A03, full insert sequence.
FL= gb:AK062099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5754011/11Ribosomal L28e protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6282.1.S1_at--933--3471Chr02:35250717..35250741 (25 bp)
CAGGTTGCCAAGTCTGGTGTGAAGA
LOC_Os02g57540
Os.6282.1.S1_at--183--7051Chr02:35250667..35250691 (25 bp)
GTAAATCGCTTGAAGCTGCGCGTTT
LOC_Os02g57540
Os.6282.1.S1_at--719--2691Chr02:35250655..35250679 (25 bp)
AAGCTGCGCGTTTTTGTCATGGCAC
LOC_Os02g57540
Os.6282.1.S1_at--805--851Chr02:35250637..35250661 (25 bp)
ATGGCACCTCTTGATGCTCATGTTT
LOC_Os02g57540
Os.6282.1.S1_at--209--5211Chr02:35250559..35250583 (25 bp)
GAATTGGATCAACCTTGTCACAGAT
LOC_Os02g57540
Os.6282.1.S1_at--315--3431Chr02:35250539..35250563 (25 bp)
CAGATCTGCCGTGTAGTTTGTATTC
LOC_Os02g57540
Os.6282.1.S1_at--994--111Chr02:35250518..35250542 (25 bp)
ATTCTAGACAGTTTATCTGCTCGGT
LOC_Os02g57540
Os.6282.1.S1_at--559--471Chr02:35250504..35250528 (25 bp)
ATCTGCTCGGTGTCCTTACAAATTG
LOC_Os02g57540
Os.6282.1.S1_at--458--7911Chr02:35250416..35250440 (25 bp)
GGATTTACAATCTGCACGTTAGTAG
LOC_Os02g57540
Os.6282.1.S1_at--576--2271Chr02:35250387..35250411 (25 bp)
AAATCTAGCTATCTCCTTGATCTCC
LOC_Os02g57540
Os.6282.1.S1_at--1030--2651Chr02:35250346..35250370 (25 bp)
AAGCCTATGAACGTAAGCACTCCCT
LOC_Os02g57540
Target Sequence 
CAGGTTGCCAAGTCTGGTGTGAAGAAGAAGAACAGGCAGCCAGCCAAGCTGTAAATCGCTTGAAGCTGCGCGTTTTTGTC
ATGGCACCTCTTGATGCTCATGTTTCCAGCTACCTCTGTNNTCTAAAAGTGTCCAGACTTGAAATGAGGGATCTCTGTTA
GAATTGGATCAACCTTGTCACAGATCTGCCGTGTAGTTTGTATTCTAGACAGTTTATCTGCTCGGTGTCCTTACAAATTG
TTTGCTTTGNCACTTATTATAGTAGCTAATGNTCATCAAATTGTGGGCNCCTGNTTGCTACTATGTGGATTTACAATCTG
CACGTTAGTAGTAGCAAATCTAGCTATCTCCTTGATCTCCTGGACAAGTTGATAGAAAGCCTATGAACGTAAGCACTCCC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis