Browse Element(s) Details


Os.6308.1.S1_at

Description gb:AK103835.1
DB_XREF= gi:32989044
TID=Os.6308.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148E17, full insert sequence.
FL= gb:AK103835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0226011/11Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0009532cellular_componentplastid stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6308.1.S1_at--529--2811Chr03:745640..745664 (25 bp)
AAGATACCTGCAGAGGTTGCCTCCG
LOC_Os03g02260
Os.6308.1.S1_at--151--4051Chr03:745603..745627 (25 bp)
CGATTGCCGATCTCCGCAATGAGAT
LOC_Os03g02260
Os.6308.1.S1_at--442--9471Chr03:745487..745511 (25 bp)
TCTGGTGGCTCGCAAGCAGGATCAC
LOC_Os03g02260
Os.6308.1.S1_at--717--5811Chr03:745405..745429 (25 bp)
GACCGTTGCCCTGCATTTAGGAGTA
LOC_Os03g02260
Os.6308.1.S1_at--395--171Chr03:745314..745338 (25 bp)
ATTTTGTTCTCCTATGACACGTCTT
LOC_Os03g02260
Os.6308.1.S1_at--735--10111Chr03:745302..745326 (25 bp)
TATGACACGTCTTCAATTCCCAAGG
LOC_Os03g02260
Os.6308.1.S1_at--459--91Chr03:745287..745311 (25 bp)
ATTCCCAAGGGCGTCCAATAGTGAT
LOC_Os03g02260
Os.6308.1.S1_at--999--2031Chr03:745251..745275 (25 bp)
ACTTTGGTTGCATGTGTTCCCTTGC
LOC_Os03g02260
Os.6308.1.S1_at--299--2491Chr03:745218..745242 (25 bp)
AACATGGGCAACACAAGCTGGGCGT
LOC_Os03g02260
Os.6308.1.S1_at--745--6371Chr03:745193..745217 (25 bp)
GATCCTCTACTCCTGTTAACTTGGA
LOC_Os03g02260
Os.6308.1.S1_at--491--6511Chr03:745170..745194 (25 bp)
GATATCTTGTTCCTCTAATTCTGTA
LOC_Os03g02260
Target Sequence 
AAGATACCTGCAGAGGTTGCCTCCGAGATCGAGACGGCGATTGCCGATCTCCGCAATGAGATGGCCTCGGATGACATTGA
GAAGATAAAGAGCAAGATCGAAGCGGCCAACAAGGCTGTCTCAAAGATTGGGCAACACATGTCTGGTGGTNGGTCTGGTG
GCTCGCAAGCAGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCG
TTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTT
CTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGC
ATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCTGTTAACTTGGATATCTTGT
TCCTCTAATTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis