Browse Element(s) Details


Os.6330.1.S1_at

Description gb:AK121575.1
DB_XREF= gi:37991198
TID=Os.6330.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036H02, full insert sequence.
FL= gb:AK121575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0718011/11Late embryogenesis abundant protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed
LOC_Os03g07180Os.6330.1.S1_at11/113+3657403..3659080Late embryogenesis abundant protein, expressed
LOC_Os03g07190Os.28404.1.A1_at11/113+3660211..3662388expressed protein
LOC_Os03g07200Os.20934.1.A1_at1/113+3662283..3664420expressed protein
LOC_Os03g07220OsAffx.25003.1.S1_at11/113+3669116..3673548pentatricopeptide, putative
LOC_Os03g07234Os.13504.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.25004.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234OsAffx.12761.1.S1_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07234Os.13561.1.S1_s_at11/113+3673853..3680697pentatricopeptide, putative
LOC_Os03g07250Os.5752.1.S1_s_at11/113+3681052..3683171Cytochrome P450 family protein, expressed
LOC_Os03g07250OsAffx.12762.1.S1_x_at11/113+3681052..3683171Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6330.1.S1_at--744--1931Chr03:3657664..3657688 (25 bp)
ACGGCAAGCAAAAGCCCCGCACGGT
LOC_Os03g07180
Os.6330.1.S1_at--264--1931Chr03:3657644..3657668 (25 bp)
ACGGTCGACGAGCTCTGAGCTAGCC
LOC_Os03g07180
Os.6330.1.S1_at--83--9951Chr03:3657624..3657648 (25 bp)
TAGCCGCCGGCGTACGGACACCGAT
LOC_Os03g07180
Os.6330.1.S1_at--1144--3351Chr03:3657606..3657630 (25 bp)
CACCGATTAGCCCATGTCAACATAG
LOC_Os03g07180
Os.6330.1.S1_at--528--3511Chr03:3657594..3657618 (25 bp)
CATGTCAACATAGCACTTTTCAGTG
LOC_Os03g07180
Os.6330.1.S1_at--391--5111Chr03:3657582..3657606 (25 bp)
GCACTTTTCAGTGATGTTTTTCAGT
LOC_Os03g07180
Os.6330.1.S1_at--918--10531Chr03:3657563..3657587 (25 bp)
TTCAGTGTGTTTGCTGTAGCTCTCC
LOC_Os03g07180
Os.6330.1.S1_at--360--6971Chr03:3657548..3657572 (25 bp)
GTAGCTCTCCACACGATGCCGTTTT
LOC_Os03g07180
Os.6330.1.S1_at--5--611Chr03:3657533..3657557 (25 bp)
ATGCCGTTTTCTGTATGCTGTTGCA
LOC_Os03g07180
Os.6330.1.S1_at--17--3231Chr03:3657442..3657466 (25 bp)
CAAGTTACTGTGTTTTTCCCACTGA
LOC_Os03g07180
Os.6330.1.S1_at--132--6811Chr03:3657431..3657455 (25 bp)
GTTTTTCCCACTGAAACTTCACTCA
LOC_Os03g07180
Target Sequence 
ACGGCAAGCAAAAGCCCCGCACGGTCGACGAGCTCTGAGCTAGCCGCCGGCGTACGGACACCGATTAGCCCATGTCAACA
TAGCACTTTTCAGTGATGTTTTTCAGTGTGTTTGCTGTAGCTCTCCACACGATGCCGTTTTCTGTATGCTGTTGCATTTT
GTACAATAATGTGATCTTTCTGTAGAGAACTTGTTTGTATTCTGTAGAGAACTTGTTTGAAACAAGTTACTGTGTTTTTC
CCACTGAAACTTCACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis