Browse Element(s) Details


Os.6346.1.S1_at

Description gb:AK100522.1
DB_XREF= gi:32985731
TID=Os.6346.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100O09, full insert sequence.
FL= gb:AK100522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1690011/11Rab GDP dissociation inhibitor alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0048227biological_processplasma membrane to endosome transport
GO:0005093molecular_functionRab GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6346.1.S1_at--581--6431Chr03:9372241..9372265 (25 bp)
GATCATCCTCCCAAAGAAACAGCTG
LOC_Os03g16900
Os.6346.1.S1_at--558--6671Chr03:9372054..9372078 (25 bp)
GTTGCTCATATGCTCACAACGTTGC
LOC_Os03g16900
Os.6346.1.S1_at--445--10531Chr03:9372016..9372040 (25 bp)
TTCATCGCCTTTGTTTCTACGGAAG
LOC_Os03g16900
Os.6346.1.S1_at--366--4751Chr03:9371966..9371990 (25 bp)
GCTGAAACCTGGGATCGATCTGCTC
LOC_Os03g16900
Os.6346.1.S1_at--164--4051Chr03:9371951..9371975 (25 bp)
CGATCTGCTCGGACCTGTAGAGGAA
LOC_Os03g16900
Os.6346.1.S1_at--59--411Chr03:9371914..9371938 (25 bp)
ATCTATGACCGATACGAACCTACTA
LOC_Os03g16900
Os.6346.1.S1_at--952--3951Chr03:9371900..9371924 (25 bp)
CGAACCTACTAATACCGCTGACGAG
LOC_Os03g16900
Os.6346.1.S1_at--548--6191Chr03:9371879..9371902 (24 bp)
GAGGACAACTGCTTCGTGACAAATA
LOC_Os03g16900
Os.6346.1.S1_at--26--3691Chr03:9371586..9371610 (25 bp)
CTTTCTGTGGATCTGAATGCTGCTA
LOC_Os03g16900
Os.6346.1.S1_at--820--4751Chr03:9371556..9371580 (25 bp)
GCTGAATCTGAAGCGGCCTGAGCGA
LOC_Os03g16900
Os.6346.1.S1_at--570--9571Chr03:9371471..9371495 (25 bp)
TCTTGCTATTCCAGTTCCATTTGAC
LOC_Os03g16900
Target Sequence 
GATCATCCTCCCAAAGAAACAGCTGAAGCGCAAATCAGACATGTACGTGTTCTGTTGCTCATATGCTCACAACGTTGCAC
CAAAAGGCAAGTTCATCGCCTTTGTTTCTACGGAAGCAGAGGCTGACAAGCCTGAGATCGAGCTGAAACCTGGGATCGAT
CTGCTCGGACCTGTAGAGGAAACATTTTTTGACATCTATGACCGATACGAACCTACTAATACCGCTGACGAGGACAACTG
CTTCGTGACAAATAGTTACGATGCAACTACTCATTTTGAGACAACGGTGAAGGATGTGCTTGCATTGTACAGCAAGATCA
CTGGGAAGGAACTTGATCTTTCTGTGGATCTGAATGCTGCTAGTGCTGCTGAATCTGAAGCGGCCTGAGCGATAGNTACT
TCTTCCAATTCCTTTTATTCTTTCATAGATGGATCTGTTCAATTAAACTACTTCTTGCTATTCCAGTTCCATTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis