Browse Element(s) Details


Os.6606.1.S1_at

Description gb:AK071495.1
DB_XREF= gi:32981518
TID=Os.6606.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6606 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for cysteine protease
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099K03, full insert sequence.
FL= gb:AK071495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1490011/11Thiol protease SEN102 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14850OsAffx.20823.2.S1_x_at1/1111+8351921..8353929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14860OsAffx.30980.1.S1_x_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14860OsAffx.30980.1.S1_at11/1111+8358548..8358898hypothetical protein
LOC_Os11g14870NANA11+8361187..8361852hypothetical protein
LOC_Os11g14880OsAffx.7112.1.S1_at11/1111+8368298..8368682hypothetical protein
LOC_Os11g14890OsAffx.30982.1.S1_at11/1111+8371068..8371854hypothetical protein
LOC_Os11g14900Os.6606.1.S1_at11/1111+8373670..8376362Thiol protease SEN102 precursor, putative, expressed
LOC_Os11g14910Os.56946.1.S1_at11/1111+8381904..8384085NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os11g14920OsAffx.22945.1.S1_at3/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14920Os.49936.2.A1_at2/1111+8387308..8390063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14930OsAffx.18868.2.A1_s_at11/1111+8395969..8399295hypothetical protein
LOC_Os11g14930OsAffx.18868.5.S1_x_at3/1111+8395969..8399295hypothetical protein
LOC_Os11g14930Os.46444.1.S1_x_at1/1111+8395969..8399295hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6606.1.S1_at--1141--1211Chr11:8374200..8374382 (25 bp)
AGTTCTATTCGGAGGGTGTCTTCAC
LOC_Os11g14900
Os.6606.1.S1_at--242--9171Chr11:8374142..8374166 (25 bp)
TGCCGCTGTCGGTTACGGTATAACT
LOC_Os11g14900
Os.6606.1.S1_at--650--7851Chr11:8374126..8374150 (25 bp)
GGTATAACTCGAGACGGCACCAAGT
LOC_Os11g14900
Os.6606.1.S1_at--756--3011Chr11:8374046..8374070 (25 bp)
AATGCAGCGTGGTGTGTCGTCAGAC
LOC_Os11g14900
Os.6606.1.S1_at--116--2011Chr11:8374023..8374047 (25 bp)
ACTCGAATGGGCTGTGTGGCATCGC
LOC_Os11g14900
Os.6606.1.S1_at--122--6251Chr11:8373998..8374022 (25 bp)
GATGGAGGCTTCTTACCCTGTCAAA
LOC_Os11g14900
Os.6606.1.S1_at--934--631Chr11:8373880..8373904 (25 bp)
ATGCTTTATGTGTGCTTCGCTGAAA
LOC_Os11g14900
Os.6606.1.S1_at--1160--4851Chr11:8373850..8373874 (25 bp)
GCTAGCTAAGCTTTCGTTGTCAACT
LOC_Os11g14900
Os.6606.1.S1_at--878--7931Chr11:8373825..8373849 (25 bp)
GGATTTAATCTTCTACTGTTCACGG
LOC_Os11g14900
Os.6606.1.S1_at--314--1971Chr11:8373811..8373835 (25 bp)
ACTGTTCACGGTTGTACTGTACGCC
LOC_Os11g14900
Os.6606.1.S1_at--496--6991Chr11:8373793..8373817 (25 bp)
GTACGCCAGGTGTCAAATCAGAAGT
LOC_Os11g14900
Target Sequence 
AGTTCTATTCGGAGGGTGTCTTCACCGGAGAATGCGGCACGGATCTCGACCANGGTGTTGCCGCTGTCGGTTACGGTATA
ACTCGAGACGGCACCAAGTACTGGATCGTCAAGAACTCGTGGGGCGAGGATTGGGGCGAGAGAGGGTACATCAGAATGCA
GCGTGGTGTGTCGTCAGACTCGAATGGGCTGTGTGGCATCGCGATGGAGGCTTCTTACCCTGTCAAATCAGGAGCACGCA
ATGCTGCTGCAAGTAACAGAGTGGTTAAAGACGAGATGTGAGCCTGTGATCGATGGAGGGATATGATATGGATATGATCG
ATGCTTTATGTGTGCTTCGCTGAAAGTAGTGCTAGCTAAGCTTTCGTTGTCAACTGGATTTAATCTTCTACTGTTCACGG
TTGTACTGTACGCCAGGTGTCAAATCAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis