Browse Element(s) Details


Os.6620.1.S1_at

Description gb:CR292655
DB_XREF= gi:44679221
DB_XREF=CR292655
CLONE=y799c07p5
TID=Os.6620.1
CNT=12
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.6620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-H07, full insert sequence
FL= gb:AK105387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g523909/11type II proteinase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed
LOC_Os03g52460Os.20397.1.S1_a_at10/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460Os.22699.1.S1_at1/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6620.1.S1_at--539--4311Chr03:30028860..30028879 (20 bp)
CCATCATAAGCTTCAGTACTCCTTG
NONE
Os.6620.1.S1_at--360--7011Chr03:30028870..30028894 (25 bp)
GTACTCCTTGCAGCGAGCATACTGA
NONE
Os.6620.1.S1_at--225--2491Chr03:30028894..30028918 (25 bp)
AACAGACAGATCACCATGGCTTCCA
LOC_Os03g52390
Os.6620.1.S1_at--1052--4271Chr03:30028944..30029071 (25 bp)
CCTGCTGTGTGGACTCATGGTGATT
LOC_Os03g52390
Os.6620.1.S1_at--225--6611Chr03:30029068..30029092 (25 bp)
GATTGGATCCATACAGAGCGCCGAG
LOC_Os03g52390
Os.6620.1.S1_at--85--9951Chr03:30029126..30029150 (25 bp)
TACGACGGCCTCGAGTACATGACGT
LOC_Os03g52390
Os.6620.1.S1_at--1102--8951Chr03:30029175..30029199 (25 bp)
TGAAACCGGCGTGCAACTGCTGCAT
LOC_Os03g52390
Os.6620.1.S1_at--768--5151Chr03:30029187..30029211 (25 bp)
GCAACTGCTGCATCGCCGGCGAGAA
LOC_Os03g52390
Os.6620.1.S1_at--1023--1411Chr03:30029208..30029232 (25 bp)
AGAAAGGCTGCGTCCTCTACCTGAA
LOC_Os03g52390
Os.6620.1.S1_at--90--8211Chr03:30029326..30029350 (25 bp)
GGAAGGCTGGAACTGTCTCTTCAGT
LOC_Os03g52390
Os.6620.1.S1_at--931--1471Chr03:30029384..30029408 (25 bp)
AGAATAAATGTCTCCCTGGTGTGAT
LOC_Os03g52390
Target Sequence 
CCATCATAAGCTTCAGTACTCCTTGCAGCGAGCATACTGAACAGACAGATCACCATGGCTTCCATCAAGCTTGCTCTCCC
AATGGCTCTCCTGCTGTGTGGACTCATGGTGATTGGATCCATACAGAGCGCCGAGGCACAAGGGGGGAAGTTTTGCCCCC
AGTTCTGCTACGACGGCCTCGAGTACATGACGTGCCCGTCGACGGGAAGCCAGCACCTGAAACCGGCGTGCAACTGCTGC
ATCGCCGGCGAGAAAGGCTGCGTCCTCTACCTGAACAACGGGCAAGTGATAAACTGCACTTGAAAGTCAGGAGCTGTTGT
TTCTTCAGTTCTTGCATGGTCACTTGCTGCTGAATAAATNTTCTCCCTGGAAGGCTGGAACTGTCTCTTCAGTTCTTGCA
TGTTCAGAGAAGATTTGTACTGCTGCAGAATAAATGTCTCCCTGGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis