Browse Element(s) Details


Os.6638.1.S1_x_at

Description gb:AK061058.1
DB_XREF= gi:32971076
TID=Os.6638.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415A04.19 (P0415A04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H08, full insert sequence.
FL= gb:AK061058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5777011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein
LOC_Os01g57760OsAffx.21697.1.S1_at11/111+33731081..33732063retrotransposon protein, putative, unclassified
LOC_Os01g57770Os.6638.1.S1_x_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.46747.1.S1_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.6638.1.S1_at9/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.55355.1.S1_x_at2/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57780NANA1+33743993..33747210retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57790OsAffx.19069.1.S1_at2/111+33749911..33753571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57800OsAffx.7789.1.S1_x_at2/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.8279.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800Os.52731.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.31867.1.S1_x_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57810NANA1+33762717..33765923hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6638.1.S1_x_at--654--5011Chr01:33737270..33737294 (25 bp)
GCAGGATGCAGAGGGCAAGCTCCCC
LOC_Os01g57770
Os.6638.1.S1_x_at--192--2071Chr01:33737295..33737319 (25 bp)
ACTTCCATGTTGTTCGGGCCGCAGA
LOC_Os01g57770
Os.6638.1.S1_x_at--352--4131Chr01:33737314..33737338 (25 bp)
CGCAGATCGCCCAAGAAAGGCTGAT
LOC_Os01g57770
Os.6638.1.S1_x_at--79--8871Chr01:33737335..33737358 (24 bp)
TGATGCAGCTGTGCTCGCCAGAGGA
LOC_Os01g57770
Os.6638.1.S1_x_at--608--6411Chr01:33741922..33741946 (25 bp)
GATCTCTGCTGAGGGTGAGCTCGAT
LOC_Os01g57770
Os.6638.1.S1_x_at--1037--9371Chr01:33741942..33741966 (25 bp)
TCGATGTTCGTGGAGGACCTGCAAA
LOC_Os01g57770
Os.6638.1.S1_x_at--613--2911Chr01:33742095..33742119 (25 bp)
AAGGAGATCGATGCGGCGGACCACC
LOC_Os01g57770
Os.6638.1.S1_x_at--279--5911Chr01:33742186..33742210 (25 bp)
GAGCTCGATGTCAACCTGCTGTTAA
LOC_Os01g57770
Os.6638.1.S1_x_at--396--471Chr01:33742219..33742243 (25 bp)
ATCTGCTGTTAGTGTTACTGCCGTT
LOC_Os01g57770
Os.6638.1.S1_x_at--778--9131Chr01:33742290..33742314 (25 bp)
TGCGGTGTTCGTCGCAACATACTGT
LOC_Os01g57770
Os.6638.1.S1_x_at--1010--6831Chr01:33742357..33742381 (25 bp)
GTTTCGGGACTTCTCTTATATTCAG
LOC_Os01g57770
Target Sequence 
GCAGGATGCAGAGGGCAAGCTCCCCACTTCCATGTTGTTCGGGCCGCAGATCGCCCAAGAAAGGCTGATGCAGCTGTGCT
CGCCAGAGGACGTCACTCTCGCGGGATCTCTGCTGAGGGTGAGCTCGATGTTCGTGGAGGACCTGCAAAAGCAGCAGCCG
TTCACCGAGGGGCGCTACGGCTCGGTGCGGAAGGTGTACGTGGTCGTAAACCAGGACCTCGCCATACCGGAGGGGTTCCA
GCGGTGGATGATCGGGAACAGCCCGGTGGATGAGGTGAAGGAGATCGATGCGGCGGACCACCTCGTGATGCTCTCGAGGC
CCGACGAGCTGGCGCGGTGCCTCGCCGACATCGCCGAAAGCTACGCTTGAGCTCGATGTCAACCTGCTGTTAATGAAGTC
AATCTGCTGTTAGTGTTACTGCCGTTTTAGCTGTCGCGTTTTGCTGCTGTAGTCTCTTTTGCGTGCCTGCGCTGCGGTGT
TCGTCGCAACATACTGTTGGGAGCTTGGAATAATTCGGTCTTCTTTTCCCACCAAATTTGTTTCGGGACTTCTCTTATAT
TCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6638.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis