Browse Element(s) Details


Os.6682.1.A1_s_at

Description gb:CB682956
DB_XREF= gi:29686681
DB_XREF=OSJNEf10M15.r
CLONE=OSJNEf10M15
TID=Os.6682.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6682 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194968.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5336011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53300Os.19100.1.S1_at11/113+30543989..30546466expressed protein
LOC_Os03g53310Os.28254.1.S1_at11/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53310Os.9084.1.S1_at10/113+30546853..30549946emp24/gp25L/p24 family protein, expressed
LOC_Os03g53320OsAffx.25699.1.S1_at11/113+30553295..30553645hypothetical protein
LOC_Os03g53340Os.2292.3.S1_x_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.1.S1_a_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53340Os.2292.2.S1_at11/113+30554477..30557569Heat shock factor protein HSF30, putative, expressed
LOC_Os03g53350NANA3+30560392..30561858Cytokinin-O-glucosyltransferase 1, putative
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein
LOC_Os03g53390OsAffx.3602.1.S1_at11/113+30583281..30586758expressed protein
LOC_Os03g53390Os.6727.1.S1_at1/113+30583281..30586758expressed protein
LOC_Os03g53400OsAffx.13479.1.S1_at11/113+30589588..30590374Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6682.1.A1_s_at--729--1111Chr03:30564870..30564894 (25 bp)
AGCCGTTCCAGATGTACGGGCCGGA
LOC_Os03g53360
Os.6682.1.A1_s_at--189--1611Chr03:30564846..30564870 (25 bp)
AGCTGACGTGCATGGCGCTCGACCA
LOC_Os03g53360
Os.6682.1.A1_s_at--789--6131Chr03:30564742..30564766 (25 bp)
GAGGGTCTCGTGATCGTCCTGCCTT
LOC_Os03g53360
Os.6682.1.A1_s_at--216--8771Chr03:30564612..30564636 (25 bp)
TGTTCGGCCCAAAGGTGGACACGCA
LOC_Os03g53360
Os.6682.1.A1_s_at--491--5631Chr03:30564595..30564619 (25 bp)
GACACGCAGGCCTCGTAGGATGTCG
LOC_Os03g53360
Os.6682.1.A1_s_at--291--8691Chr03:30564567..30564591 (25 bp)
TGTCGGCCCACAGAAAAACTCATCT
LOC_Os03g53360
Os.6682.1.A1_s_at--168--3551Chr03:30564547..30564571 (25 bp)
CATCTGGGTTTCTTTGTGCTTTACT
LOC_Os03g53360
Os.6682.1.A1_s_at--1096--6251Chr03:30564511..30564535 (25 bp)
GATGTGGCCTTCAAAAGTTCAAATG
LOC_Os03g53360
Os.6682.1.A1_s_at--934--2991Chr03:30564490..30564514 (25 bp)
AATGATTGATGTACCCTGCTTTGAT
LOC_Os03g53360
Os.6682.1.A1_s_at--741--7811Chr03:30564451..30564475 (25 bp)
GGTCTTCTGTTGTAATGCATTTCCT
LOC_Os03g53360
Os.6682.1.A1_s_at--879--411Chr03:30564437..30564461 (25 bp)
ATGCATTTCCTAGTTACAAGTTACA
LOC_Os03g53360
Target Sequence 
AGCCGTTCCAGATGTACGGGCCGGAGCTGACGTGCATGGCGCTCGACCACGTGCCCCTCTACGGCGCGGAGTTCGCGGCC
GGGGCGGCGCCGGCGCGCGCCGCGTGCCGCGTCGGCGGGGCGAGCGGCGAGGGTCTCGTGATCGTCCTGCCTTCGGCCGA
GGGCGAGTCCGCGAGGGACGTGGCGGTGACGCTGCCGGCGGCGGTGACGGCCAGGATCTGCCGCGACGGCGAGGTGCTCC
GGTACGGCGCCGACGTGGTGTTCGGCCCAAAGGTGGACACGCAGGCCTCGTAGGATGTCGGGCTGTCGGCCCACAGAAAA
ACTCATCTGGGTTTCTTTGTGCTTTACTTAATTTGTTGTGATGTGGCCTTCAAAAGTTCAAATGATTGATGTACCCTGCT
TTGATGTGNTTTTTTTTTTTGGTCTTCTGTTGTAATGCATTTCCTAGTTACAAGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6682.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis