Browse Element(s) Details


Os.6721.1.S1_at

Description gb:AK121619.1
DB_XREF= gi:37991242
TID=Os.6721.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044O03, full insert sequence.
FL= gb:AK121619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4004010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40020Os.54689.1.S1_x_at11/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40020Os.5813.1.S1_at1/116+23805011..23810039DEAD-box protein 3, Y-chromosomal, putative, expressed
LOC_Os06g40030Os.8136.1.A1_at11/116+23811380..23814107D-mannose binding lectin family protein, expressed
LOC_Os06g40040Os.6721.1.S1_x_at10/116+23820377..23822282expressed protein
LOC_Os06g40040Os.6721.1.S1_at10/116+23820377..23822282expressed protein
LOC_Os06g40050Os.19230.2.S1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40050Os.19230.1.A1_at11/116+23822718..23826299Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os06g40060Os.14852.1.A1_at10/116+23842286..23846139glycosyltransferase family 14 protein, putative, expressed
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6721.1.S1_at--228--391Chr06:23820627..23820651 (25 bp)
ATCACGGAGCCGCACAAGAAGAACC
LOC_Os06g40040
Os.6721.1.S1_at--51--3231Chr06:23821119..23821141 (23 bp)
CAAGAGATACATGCAGCAGCATAAT
LOC_Os06g40040
Os.6721.1.S1_at--444--3411Chr06:23821130..23821154 (25 bp)
CAGCAGCATAATGAGGTGGAGCTCT
LOC_Os06g40040
Os.6721.1.S1_at--665--3831Chr06:23822097..23822121 (25 bp)
CTGCTGAGGGCGAGGAACAAGGCTA
LOC_Os06g40040
Os.6721.1.S1_at--418--1191Chr06:23822152..23822176 (25 bp)
AGTTTAATTTAGTACTCCTGCTAGG
LOC_Os06g40040
Os.6721.1.S1_at--337--10331Chr06:23822154..23822178 (25 bp)
TTTAATTTAGTACTCCTGCTAGGTT
LOC_Os06g40040
Os.6721.1.S1_at--727--9771Chr06:23822179..23822203 (25 bp)
TAAGTTTCCGTTTATTGTGGTCAGC
LOC_Os06g40040
Os.6721.1.S1_at--1029--9071Chr06:23822235..23822259 (25 bp)
TGCTTATTTGATTCGTTTGAATGAT
LOC_Os06g40040
Os.6721.1.S1_at--627--5271Chr06:23822253..23822277 (25 bp)
GAATGATAGTTCATGGTGCCTATTT
LOC_Os06g40040
Os.6721.1.S1_at--112--6491Chr06:23822257..23822281 (25 bp)
GATAGTTCATGGTGCCTATTTTTGT
LOC_Os06g40040
Os.6721.1.S1_at--569--8811Chr06:23822301..23822325 (25 bp)
TGTTGTTGTGCTTAAAGCTTTTAGC
NONE
Target Sequence 
ATCACGGAGCCGCACAAGAAGAACCGGATCCAGGTCTCCAACACCAAGAAGCCGCTCTTCTTCTACGTCAACCTCGCCAA
GAGATACATGCAGCAGCATAATGAGGTGGAGCTCTCGGCGCTCGGCATGGCCATTGCCACTNGTGGTGACTGTTGCGGAA
ATTCTAAAAAATAATGGCCTTGCTGTTGAAAAGAAGATCATGACATCAACTGTTGATGTCAAAGACGACTCAAGGAGCCG
TCCTATGCAGAAGGCGAAGATTGAAATTTTGCTTGGGAAGACGGAGAAGTTTGATGAGCTGATGGCAGCTGCTGCCGAGG
AGAGGGAAGCCGCGGCTGCTGCTGAGGGCGAGGAACAAGGCTAGCTAAATAAACTATTTTAAGTTGGCTGTTGAGTTTAA
TTTAGTACTCCTGCTAGGTTTAAGTTTCCGTTTATTGTGGTCAGCNAAGAGACTTATCTTGTGTAATCAAAAAGCTCTGC
TTATTTGATTCGTTTGAATGATAGTTCATGGTGCCTATTTTTGTTANNNNNNNNNNANNNNAATGTTGTTGTGCTTAAAG
CTTTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis