Browse Element(s) Details


Os.6722.1.S1_at

Description gb:AK072390.1
DB_XREF= gi:32982413
TID=Os.6722.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative shaggy-like kinase (OSJNBb0028C01.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081B07, full insert sequence.
FL= gb:AK072390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3774011/11Shaggy-related protein kinase theta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed
LOC_Os10g37780NANA10+19888907..19889467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g37800OsAffx.47.1.S1_at11/1110+19895617..19901898retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009933biological_processmeristem organization
GO:0016310biological_processphosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6722.1.S1_at--1154--2951Chr10:19867579..19867603 (25 bp)
AATGGACGATCATTACCACCCTTGT
LOC_Os10g37740
Os.6722.1.S1_at--433--2951Chr10:19867443..19867467 (25 bp)
AAGGCCTTCCTGTTGAGCTAGTCCA
LOC_Os10g37740
Os.6722.1.S1_at--935--10051Chr10:19867425..19867449 (25 bp)
TAGTCCACCGAATCATTCCTGAACA
LOC_Os10g37740
Os.6722.1.S1_at--385--6951Chr10:19867288..19867312 (25 bp)
GTAGACTAGATTCACTGCCTTGCTA
LOC_Os10g37740
Os.6722.1.S1_at--129--6211Chr10:19867208..19867232 (25 bp)
GAGGCAGTGGCTCATTCTGATGCAA
LOC_Os10g37740
Os.6722.1.S1_at--883--8231Chr10:19867150..19867174 (25 bp)
GGCAACTCGCACATTTTCATCATGT
LOC_Os10g37740
Os.6722.1.S1_at--910--9611Chr10:19867131..19867155 (25 bp)
TCATGTGCCACCAGAGACGTTTATC
LOC_Os10g37740
Os.6722.1.S1_at--402--5771Chr10:19867116..19867140 (25 bp)
GACGTTTATCTACTAGGCTGCTGTT
LOC_Os10g37740
Os.6722.1.S1_at--97--6871Chr10:19867060..19867084 (25 bp)
GTTTGTAGACACTTGTTTCCCTGAA
LOC_Os10g37740
Os.6722.1.S1_at--858--2851Chr10:19867008..19867032 (25 bp)
AAGTGCTTGCTTTGCTATCATGAAA
LOC_Os10g37740
Os.6722.1.S1_at--939--2951Chr10:19866946..19866970 (25 bp)
AATGGCCTTTCCTTTATGTTTCAGA
LOC_Os10g37740
Target Sequence 
AATGGACGATCATTACCACCCTTGTTCGACTTCTCAGCTGCTGAATTGGAAGGCCTTCCTGTTGAGCTAGTCCACCGAAT
CATTCCTGAACATATGAGGAAGTGAAACGGAATGGCAGGAAAACACAATTTCGCTGTTAGAACAGCGGATAGGTGTGAGT
GAGATGGTTGATGCAAACATCCATAACTTATGGATGGATCAGGAGTAGACTAGATTCACTGCCTTGCTAGATGTGGAAAG
AGGGATGCTATAGAAGTTCCTCATCATCACTTCACATAAAGAGCGAGGCAGTGGCTCATTCTGATGCAATTCCAAGAGGT
AATGAGCAACTGAGATTGGCACGGCAACTCGCACATTTTCATCATGTGCCACCAGAGACGTTTATCTACTAGGCTGCTGT
TGTATAATCAGGTACATGCTGAGTTTGCAGTTGTTTGTAGACACTTGTTTCCCTGAACAAGCGATGAGAGAAATCCAGAT
TCCAAAGTGCTTGCTTTGCTATCATGAAAGCCTGNCCGGAACATGTCAATTTTGATTAGNGCACGCAATGGCCTTTCCTT
TATGTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis