Browse Element(s) Details


Os.6752.1.S1_at

Description gb:AK060006.1
DB_XREF= gi:32970024
TID=Os.6752.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B06, full insert sequence.
FL= gb:AK060555.1 gb:AK104118.1 gb:AK106175.1 gb:AK060006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g396709/11PRA1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein
LOC_Os05g39720Os.50108.1.S1_at11/115+23227315..23230243DNA-binding protein WRKY1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6752.1.S1_at--253--4611Chr05:23202201..23202225 (25 bp)
GCGACGAGATCTGGTAGGCTTCTTT
LOC_Os05g39670
Os.6752.1.S1_at--946--911Chr05:23202216..23202240 (25 bp)
AGGCTTCTTTGGCTCGAGTGTTTCG
LOC_Os05g39670
Os.6752.1.S1_at--929--6111Chr05:23202231..23202255 (25 bp)
GAGTGTTTCGCGTTACTCTGTAATT
LOC_Os05g39670
Os.6752.1.S1_at--400--6411Chr05:23202256..23202280 (25 bp)
GATCTGGATCTGATCTCGTTGGATC
LOC_Os05g39670
Os.6752.1.S1_at--279--7971Chr05:23202276..23202300 (25 bp)
GGATCTATATCACATTTGTTCTCTA
LOC_Os05g39670
Os.6752.1.S1_at--972--10531Chr05:23202302..23202326 (25 bp)
TTCATCATTCTGCAATCCGTAGCTA
LOC_Os05g39670
Os.6752.1.S1_at--383--3431Chr05:23202327..23202351 (25 bp)
CAGATCTACTACTTGTTTACCTATA
LOC_Os05g39670
Os.6752.1.S1_at--673--7971Chr05:23202356..23202380 (25 bp)
GGATCGATGTATCACTTTGCGAAGT
LOC_Os05g39670
Os.6752.1.S1_at--1123--6071Chr05:23202471..23202495 (25 bp)
GAGTATGTCGACTTATCACTGTTTA
LOC_Os05g39670
Os.6752.1.S1_at--523--6251Chr05:23202516..23202540 (25 bp)
GATGGTTCAGCTGTGCATTGTCACT
NONE
Os.6752.1.S1_at--422--8691Chr05:23202527..23202551 (25 bp)
TGTGCATTGTCACTTTTCATTCAAA
NONE
Target Sequence 
GCGACGAGATCTGGTAGGCTTCTTTGGCTCGAGTGTTTCGCGTTACTCTGTAATTGATCTGGATCTGATCTCGTTGGATC
TATATCACATTTGTTCTCTAATTCATCATTCTGCAATCCGTAGCTACAGATCTACTACTTGTTTACCTATATTTTGGATC
GATGTATCACTTTGCGAAGTTGTGCTGAATATATTGAGTCTCTTGACGAGATTTAGTGTTAAAATTACTACCTTATATTG
TTTTGAATTAATTTAGCATGAATGTATGAAGAGTATGTCGACTTATCACTGTTTAAATAGTAGAGAAGAATATATGATGG
TTCAGCTGTGCATTGTCACTTTTCATTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis