Browse Element(s) Details


Os.6823.1.S1_at

Description gb:AA750422
DB_XREF= gi:2797128
DB_XREF=ISCN0076
CLONE=ISCN0076
TID=Os.6823.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S RIBOSOMAL PROTEIN L36 (P0408C03.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6235011/1160S ribosomal protein L36-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62310Os.16013.1.S1_at11/111+36384212..36386416Homeobox domain containing protein, expressed
LOC_Os01g62320OsAffx.22699.1.S1_x_at2/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62320Os.45161.1.A1_x_at1/111+36395568..36400018retrotransposon protein, putative, unclassified
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6823.1.S1_at--304--4791Chr01:36411071..36411095 (25 bp)
GCTCCATATGAGAAACGAATCACTG
LOC_Os01g62350
Os.6823.1.S1_at--915--1831Chr01:36411057..36411081 (25 bp)
ACGAATCACTGAGCTTCTGAAGGTT
LOC_Os01g62350
Os.6823.1.S1_at--1074--1531Chr01:36411046..36411070 (25 bp)
AGCTTCTGAAGGTTGGAAAGGACAA
LOC_Os01g62350
Os.6823.1.S1_at--236--1971Chr01:36411015..36411039 (25 bp)
ACTGAAGGTCGCTAAGAGAAAGCTC
LOC_Os01g62350
Os.6823.1.S1_at--1156--5971Chr01:36411000..36411024 (25 bp)
GAGAAAGCTCGGTACCCACAAGAGA
LOC_Os01g62350
Os.6823.1.S1_at--591--9431Chr01:36410992..36411016 (25 bp)
TCGGTACCCACAAGAGAGCAAAGAA
LOC_Os01g62350
Os.6823.1.S1_at--57--1311Chr01:36410127..36410146 (20 bp)
AGATGAGGTCTGCTGGTACTACTGA
LOC_Os01g62350
Os.6823.1.S1_at--537--7171Chr01:36410120..36410144 (25 bp)
GTCTGCTGGTACTACTGACAAGAAG
LOC_Os01g62350
Os.6823.1.S1_at--1014--7072Chr10:1415094..1415218 (24 bp)
GTAATTCATTTATATGGACCTATAG
NONE
Os.6823.1.S1_at--468--1171Chr01:36410030..36410054 (25 bp)
AGTAAGCTCTAGATCGAGGTGCTGT
LOC_Os01g62350
Os.6823.1.S1_at--356--6151Chr01:36410015..36410039 (25 bp)
GAGGTGCTGTATTGCCGTTGAGAAC
LOC_Os01g62350
Target Sequence 
GCTCCATATGAGAAACGAATCACTGAGCTTCTGAAGGTTGGAAAGGACAAGCGTGCACTGAAGGTCGCTAAGAGAAAGCT
CGGTACCCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGGNGGGTGTCATCAGGAAGATGAGGTCTGCTGGTACTACTG
ACAAGAAGAAATAGAAGTTTCAAGTTGAAGNTCTTTTTNCAATCCTTATTGTAATTCATTTATATGGACCTATAGTAAGC
TCTAGATCGAGGTGCTGTATTGCCGTTGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis