Browse Element(s) Details


Os.6839.1.S1_at

Description gb:CR293455
DB_XREF= gi:44680021
DB_XREF=CR293455
CLONE=y859c11p3
TID=Os.6839.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6839 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g457004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45630NANA1+26252228..26252770transposon protein, putative, Mutator sub-class
LOC_Os01g45640Os.1818.1.S1_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45640Os.45997.1.S1_x_at10/111+26253084..26255056Tat pathway signal sequence family protein, expressed
LOC_Os01g45650OsAffx.23672.1.S1_at11/111+26255438..26256574F-box domain containing protein
LOC_Os01g45650Os.54052.1.S1_at1/111+26255438..26256574F-box domain containing protein
LOC_Os01g45660Os.49764.1.S1_at5/111+26258223..26258447hypothetical protein
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6839.1.S1_at--41--5291Chr01:26276952..26276976 (25 bp)
GAATGTACTGTAGCAGTTCATTTCA
LOC_Os01g45700
Os.6839.1.S1_at--491--2991Chr01:26276953..26276977 (25 bp)
AATGTACTGTAGCAGTTCATTTCAT
LOC_Os01g45700
Os.6839.1.S1_at--580--751Chr01:26276954..26276978 (25 bp)
ATGTACTGTAGCAGTTCATTTCATA
LOC_Os01g45700
Os.6839.1.S1_at--1124--6991Chr01:26276956..26276979 (24 bp)
GTACTGTAGCAGTTCATTTCATATC
LOC_Os01g45700
Os.6839.1.S1_at--894--9911NONE
TACTGTAGCAGTTCATTTCATATCG
NONE
Os.6839.1.S1_at--252--1971NONE
ACTGTAGCAGTTCATTTCATATCGT
NONE
Os.6839.1.S1_at--1106--3871NONE
CTGTAGCAGTTCATTTCATATCGTC
NONE
Os.6839.1.S1_at--778--8751NONE
TGTAGCAGTTCATTTCATATCGTCA
NONE
Os.6839.1.S1_at--36--6971NONE
GTAGCAGTTCATTTCATATCGTCAA
NONE
Os.6839.1.S1_at--1075--10011NONE
TAGCAGTTCATTTCATATCGTCAAG
NONE
Os.6839.1.S1_at--126--1531NONE
AGCAGTTCATTTCATATCGTCAAGT
NONE
Target Sequence 
GAATGTACTGTAGCAGTTCATTTCATATCGTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis